Search Nipponbare

Mutant Information

Mutant Name	FN2201-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2201-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12810481	G-T	HET
SBS	Chr1	38441528	C-T	HET
SBS	Chr1	8603244	C-T	Homo
SBS	Chr10	22373040	G-T	HET
SBS	Chr10	22373041	C-T	HET
SBS	Chr10	4383648	A-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g08100
SBS	Chr10	9261482	C-A	HET
SBS	Chr11	18765161	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g31920
SBS	Chr11	22388781	T-A	HET
SBS	Chr12	10151235	T-A	HET
SBS	Chr12	13763873	T-C	HET
SBS	Chr12	19477213	C-T	Homo
SBS	Chr12	24242495	C-T	Homo
SBS	Chr12	26860860	C-T	Homo
SBS	Chr2	10163884	T-C	Homo
SBS	Chr3	13914554	C-T	HET
SBS	Chr3	17368404	G-T	HET
SBS	Chr3	24190876	C-T	HET
SBS	Chr3	6662280	A-G	HET
SBS	Chr3	7466294	C-A	HET
SBS	Chr4	12325934	A-T	Homo
SBS	Chr4	13689396	T-C	Homo
SBS	Chr4	23413937	T-G	HET
SBS	Chr5	27145679	C-T	HET
SBS	Chr6	7681290	T-C	HET
SBS	Chr7	14136333	C-A	HET
SBS	Chr7	19174661	G-T	HET
SBS	Chr7	21022884	C-T	Homo
SBS	Chr7	8070857	G-A	HET
SBS	Chr8	14043796	C-T	Homo
SBS	Chr8	22283208	G-A	Homo
SBS	Chr8	3389566	C-T	HET	STOP_GAINED	LOC_Os08g06140
SBS	Chr8	8871307	T-A	HET
SBS	Chr8	9519	C-T	HET
SBS	Chr9	12081052	T-C	Homo
SBS	Chr9	8668718	C-T	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	717773	717797	24
Deletion	Chr11	1570994	1570996	2
Deletion	Chr5	4013813	4013814	1
Deletion	Chr11	9185001	9225000	39999	6
Deletion	Chr11	10865001	10892000	26999	3
Deletion	Chr10	10945000	10945012	12
Deletion	Chr10	17859923	17859932	9
Deletion	Chr7	18123696	18123846	150
Deletion	Chr10	19919285	19919286	1
Deletion	Chr11	27200001	27264000	63999	11
Deletion	Chr2	29531824	29531833	9

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25082257	25082258	2
Insertion	Chr6	16047166	16047234	69
Insertion	Chr8	16900172	16900175	4

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	26491760	27068914	2
Inversion	Chr8	26491806	27068928	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3517758	Chr2	16967195	2
Translocation	Chr10	3519119	Chr2	22246533	2
Translocation	Chr8	3817864	Chr7	1714448	2

Main menu