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Mutant Information

Mutant Name	FN2203-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2203-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22159421	C-T	HET	STOP_GAINED	LOC_Os01g39370
SBS	Chr1	31561187	A-G	HET
SBS	Chr1	40184211	C-T	HET
SBS	Chr1	9739250	C-T	HET
SBS	Chr10	12541509	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24450
SBS	Chr11	10220651	A-C	HET
SBS	Chr11	23110319	G-A	HET
SBS	Chr11	860049	A-G	HET
SBS	Chr12	10356943	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18010
SBS	Chr12	13554421	G-A	Homo
SBS	Chr12	19179814	C-T	HET
SBS	Chr12	19179815	C-T	HET
SBS	Chr12	20467109	C-T	HET
SBS	Chr2	19027910	A-G	HET
SBS	Chr2	23181231	C-T	HET
SBS	Chr2	25598959	G-A	HET
SBS	Chr2	30370446	C-T	HET
SBS	Chr3	1862659	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g04070
SBS	Chr3	18958000	C-A	HET	STOP_GAINED	LOC_Os03g33140
SBS	Chr3	19125647	C-T	HET
SBS	Chr3	23712183	A-T	HET
SBS	Chr4	11606408	G-A	Homo
SBS	Chr6	101260	G-A	HET
SBS	Chr6	17899995	C-T	HET
SBS	Chr6	25065282	G-A	HET
SBS	Chr6	7159447	G-A	Homo
SBS	Chr7	14261541	C-A	HET
SBS	Chr7	16145112	G-A	Homo
SBS	Chr7	1803539	G-A	HET
SBS	Chr7	22684266	A-C	HET
SBS	Chr7	22688743	C-T	HET
SBS	Chr7	28193181	A-G	Homo
SBS	Chr8	24651977	C-T	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	348650	348652	2
Deletion	Chr7	4011933	4011947	14
Deletion	Chr2	8214469	8214476	7
Deletion	Chr7	11368060	11368062	2	LOC_Os07g19200
Deletion	Chr12	11906261	11906264	3
Deletion	Chr8	13495271	13495273	2	LOC_Os08g22380
Deletion	Chr4	13804536	13804555	19
Deletion	Chr3	14388206	14388209	3
Deletion	Chr4	15182299	15182300	1
Deletion	Chr9	21411625	21411644	19
Deletion	Chr7	21433303	21433308	5
Deletion	Chr1	22198206	22198207	1
Deletion	Chr12	22278001	22309000	30999	7
Deletion	Chr4	24743000	24743002	2
Deletion	Chr2	28947001	29015000	67999	8
Deletion	Chr4	34296954	34296957	3
Deletion	Chr1	38640333	38640335	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34064088	34064089	2
Insertion	Chr3	3786951	3786952	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	14830644	15791186	2
Inversion	Chr11	14830652	15791192	2
Inversion	Chr1	33866228	34133597
Inversion	Chr1	33866328	34134394	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8952866	Chr2	28493602	2
Translocation	Chr6	8953380	Chr2	28494576	2
Translocation	Chr6	10194145	Chr2	30977614
Translocation	Chr6	21595078	Chr3	25930994

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