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Mutant Information

Mutant NameFN2204-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2204-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 57
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr12025928G-THomo
SBSChr1013594159C-AHET
SBSChr1019471291C-THETNON_SYNONYMOUS_CODINGLOC_Os10g36420
SBSChr1019989949A-THET
SBSChr1020045642G-THETNON_SYNONYMOUS_CODINGLOC_Os10g37450
SBSChr105092186C-AHETNON_SYNONYMOUS_CODINGLOC_Os10g09440
SBSChr106375277T-AHET
SBSChr106876631A-CHET
SBSChr1111364761T-CHET
SBSChr1111393813T-CHET
SBSChr1113999801T-AHET
SBSChr1115830166A-THET
SBSChr11161374C-THET
SBSChr1116791493A-CHET
SBSChr1118342894C-GHET
SBSChr1118680745C-THET
SBSChr112481981C-GHETNON_SYNONYMOUS_CODINGLOC_Os11g05494
SBSChr1128501058G-AHET
SBSChr113237978T-AHET
SBSChr113969100G-AHETNON_SYNONYMOUS_CODINGLOC_Os11g07790
SBSChr119438602C-AHET
SBSChr125533921T-CHomo
SBSChr212566764G-AHET
SBSChr232230623C-THomoNON_SYNONYMOUS_CODINGLOC_Os02g52690
SBSChr314176823C-THET
SBSChr324489140G-CHETNON_SYNONYMOUS_CODINGLOC_Os03g43770
SBSChr325464441T-CHET
SBSChr32766994T-GHET
SBSChr328118683A-GHET
SBSChr329479701T-AHET
SBSChr329479702A-THET
SBSChr329479708T-GHET
SBSChr36097092A-GHomo
SBSChr41331266C-AHETNON_SYNONYMOUS_CODINGLOC_Os04g03180
SBSChr414533483T-CHET
SBSChr428993709C-THET
SBSChr429470438T-GHET
SBSChr43272975A-GHET
SBSChr43346791C-THET
SBSChr44523753A-THET
SBSChr515305393G-AHomo
SBSChr522168581G-THET
SBSChr56163800T-AHET
SBSChr56386982C-THET
SBSChr610396610A-GHomo
SBSChr618280784A-GHomo
SBSChr713671785G-CHET
SBSChr716880617G-AHET
SBSChr718863525C-AHET
SBSChr720856579G-AHETNON_SYNONYMOUS_CODINGLOC_Os07g34800
SBSChr726621083A-GHET
SBSChr910904392C-THET
SBSChr911323508G-AHET
SBSChr912677576G-AHET
SBSChr914191705G-THET
SBSChr917104685C-AHET
SBSChr96731309C-THET

Deletions: 21
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1206971420697184
DeletionChr63018811301882413
DeletionChr2449010644901126
DeletionChr2566574256657475LOC_Os02g10740
DeletionChr5581078758107903
DeletionChr967340016766000319996
DeletionChr38718468871847810LOC_Os03g15800
DeletionChr12874463287446342
DeletionChr2128299651282998217LOC_Os02g21600
DeletionChr2141798551417986611LOC_Os02g24480
DeletionChr1214744978147449791
DeletionChr715735148157351568
DeletionChr1116390369163903767LOC_Os11g28480
DeletionChr718357808183578091
DeletionChr1019233144192331462
DeletionChr1125020786250207893
DeletionChr627023683270236852
DeletionChr827568898275688991
DeletionChr1305263713052638312
DeletionChr431987481319874843
DeletionChr33517100135182000109992

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr10206646620664672
InsertionChr1125044113250441164
InsertionChr625246934252469352

Inversions: 6
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr967211776731526LOC_Os09g11940
InversionChr9672122767624872
InversionChr121052474410650329
InversionChr121052474510650334
InversionChr32868087728957279
InversionChr328957331294552002

Translocations: 4
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr516830474Chr413837212
TranslocationChr516830497Chr413836222
TranslocationChr1119436501Chr2526961LOC_Os11g32900
TranslocationChr1119436814Chr2526949LOC_Os11g32900