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Mutant Information

Mutant Name	FN2205-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2205-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18444789	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g33510
SBS	Chr1	35356428	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61090
SBS	Chr12	11155537	G-A	HET
SBS	Chr2	262791	T-C	HET
SBS	Chr2	294985	A-T	HET
SBS	Chr2	6425715	C-T	HET
SBS	Chr3	32872462	G-A	Homo	STOP_GAINED	LOC_Os03g57680
SBS	Chr4	15483111	C-T	Homo
SBS	Chr4	23338071	G-T	Homo
SBS	Chr4	9537826	C-T	Homo
SBS	Chr5	10913318	C-A	Homo
SBS	Chr5	15864189	A-G	Homo
SBS	Chr5	16830148	T-A	Homo
SBS	Chr6	14554315	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g24780
SBS	Chr6	19993475	T-C	Homo
SBS	Chr6	26961169	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g44670
SBS	Chr7	10375358	C-T	HET
SBS	Chr7	23595289	G-A	Homo
SBS	Chr7	24986660	A-G	Homo
SBS	Chr8	1586783	T-A	Homo
SBS	Chr8	17087848	T-A	HET
SBS	Chr8	7702493	G-A	HET
SBS	Chr8	8290889	T-A	HET
SBS	Chr9	1729623	T-A	HET
SBS	Chr9	4091276	C-T	Homo
SBS	Chr9	6494948	C-A	HET
SBS	Chr9	7260586	T-C	HET
SBS	Chr9	9763431	G-C	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	604103	604104	1
Deletion	Chr1	629200	629204	4
Deletion	Chr8	2836478	2836479	1
Deletion	Chr8	7002220	7002224	4	LOC_Os08g11940
Deletion	Chr8	8241318	8241319	1
Deletion	Chr10	9298684	9298688	4	LOC_Os10g18294
Deletion	Chr1	9567817	9567829	12
Deletion	Chr2	10853046	10853047	1
Deletion	Chr4	14321424	14321439	15
Deletion	Chr11	19069264	19069266	2
Deletion	Chr6	20605770	20605772	2
Deletion	Chr9	22384555	22384564	9
Deletion	Chr7	22811581	22811582	1
Deletion	Chr4	27358001	27415000	56999	6
Deletion	Chr3	30970139	30970150	11	LOC_Os03g54020
Deletion	Chr2	34834056	34834059	3	LOC_Os02g56840

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	11129445	11129445	1
Insertion	Chr6	2755644	2755645	2
Insertion	Chr7	24530941	24530941	1
Insertion	Chr9	18172502	18172507	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1248188	1585918
Inversion	Chr7	1248203	1588214

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1585929	Chr5	26156862	2
Translocation	Chr7	1588211	Chr4	27413601
Translocation	Chr5	19190128	Chr4	13832267
Translocation	Chr5	26154925	Chr4	27358686	2

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