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Mutant Information

Mutant Name	FN2206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2206-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36860591	C-T	Homo
SBS	Chr1	37094859	G-A	HET
SBS	Chr10	10082983	G-T	HET
SBS	Chr10	10082984	A-T	HET
SBS	Chr10	8958435	C-T	HET
SBS	Chr11	18121208	C-T	HET
SBS	Chr2	11001413	T-A	HET
SBS	Chr2	14432393	G-A	Homo
SBS	Chr2	14432394	C-A	Homo
SBS	Chr3	22886929	C-G	Homo
SBS	Chr3	27963684	A-T	Homo
SBS	Chr6	27084522	G-A	HET
SBS	Chr7	4873694	C-T	HET
SBS	Chr8	23610054	G-A	HET

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	388070	388071	1
Deletion	Chr4	2346080	2346085	5
Deletion	Chr6	6146267	6146278	11
Deletion	Chr4	7071480	7071481	1
Deletion	Chr2	11311473	11311475	2
Deletion	Chr12	11911824	11911825	1
Deletion	Chr2	33396539	33396540	1
Deletion	Chr1	37910001	37918000	7999	2
Deletion	Chr1	42818176	42818180	4

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	29173556	29173556	1
Insertion	Chr11	13909369	13909395	27
Insertion	Chr12	21777752	21777752	1	LOC_Os12g35760
Insertion	Chr3	8825394	8825394	1
Insertion	Chr4	32929666	32929666	1
Insertion	Chr6	9639783	9639826	44

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	41966965	41970523	LOC_Os01g72350
Inversion	Chr1	41966967	41970523	LOC_Os01g72350

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	7357862	Chr3	32500835
Translocation	Chr5	9090919	Chr2	15277487	2
Translocation	Chr11	11831971	Chr7	14037580	2
Translocation	Chr5	14575787	Chr2	8032374
Translocation	Chr8	15958057	Chr2	610767
Translocation	Chr7	17385329	Chr2	21197237
Translocation	Chr11	19930910	Chr8	19933685
Translocation	Chr6	21336974	Chr4	20208694
Translocation	Chr9	21400560	Chr2	18636883	LOC_Os09g37110
Translocation	Chr12	25470673	Chr7	25234631