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Mutant Information

Mutant NameFN2207-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2207-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 51
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr110216982T-CHET
SBSChr116177106A-GHET
SBSChr11733394G-AHomo
SBSChr125147851A-THET
SBSChr125247238A-THET
SBSChr129344350G-CHomo
SBSChr13393632G-AHomo
SBSChr141283106G-AHET
SBSChr17943915G-AHET
SBSChr1014559604T-AHomoNON_SYNONYMOUS_CODINGLOC_Os10g28050
SBSChr1014749416G-CHomo
SBSChr106867844T-CHET
SBSChr1210250750G-AHomo
SBSChr1217160627C-THomo
SBSChr1218221744G-AHET
SBSChr122236289G-CHET
SBSChr1226256567G-AHET
SBSChr229665128T-GHomo
SBSChr231087110A-CHET
SBSChr232926517C-GHomo
SBSChr24398262G-AHomoNON_SYNONYMOUS_CODINGLOC_Os02g08280
SBSChr25322878T-AHomo
SBSChr31523512T-CHET
SBSChr31523513T-AHET
SBSChr315559157A-THET
SBSChr334923680T-GHET
SBSChr416297758T-GHET
SBSChr418456166C-THETNON_SYNONYMOUS_CODINGLOC_Os04g30880
SBSChr421152492A-GHET
SBSChr45442272A-THET
SBSChr511304025G-AHET
SBSChr513618174C-THET
SBSChr516163607A-THET
SBSChr521062877A-GHET
SBSChr54527762G-THETNON_SYNONYMOUS_CODINGLOC_Os05g08290
SBSChr5510701T-CHomo
SBSChr57939765C-THET
SBSChr57939766G-THET
SBSChr57939767A-GHET
SBSChr616428163C-THomo
SBSChr628951156A-GHomo
SBSChr630436203G-AHomo
SBSChr67675528A-GHET
SBSChr720783800G-AHomo
SBSChr77276029C-THET
SBSChr77828659G-AHomo
SBSChr786591C-THET
SBSChr786594C-THET
SBSChr7911784A-THET
SBSChr79273667T-AHET
SBSChr84305909G-AHET

Deletions: 6
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr1013890011405000159994
DeletionChr4263353526335361
DeletionChr2768737776873814
DeletionChr10793538279353831
DeletionChr621295074212950817
DeletionChr221353744213537451

Insertions: 6
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr1218817390188173901
InsertionChr12849124984912491
InsertionChr525823164258231652
InsertionChr53110923110932
InsertionChr812039186120391872
InsertionChr8918414691841483

Inversions: 1
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr71986711920238883

Translocations: 13
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr111001717Chr2152928722
TranslocationChr73694488Chr43213549
TranslocationChr93873679Chr6182218032
TranslocationChr124227535Chr325611567
TranslocationChr716499425Chr612598602
TranslocationChr1119200649Chr94333802
TranslocationChr919929206Chr4266487472
TranslocationChr1120051526Chr619235822
TranslocationChr722812921Chr12937962
TranslocationChr1224586754Chr12640511LOC_Os12g39800
TranslocationChr1126252062Chr7133893612
TranslocationChr1226916650Chr217337440LOC_Os12g43430
TranslocationChr1126960166Chr527709523LOC_Os11g44590