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Mutant Information

Mutant Name	FN2211-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2211-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14109110	A-G	HET
SBS	Chr1	15043653	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g27000
SBS	Chr11	20094587	C-T	Homo
SBS	Chr11	20094588	G-T	Homo
SBS	Chr11	25527890	C-A	HET
SBS	Chr11	9245966	G-A	HET
SBS	Chr2	15641474	C-T	HET
SBS	Chr2	27175801	G-A	HET
SBS	Chr2	32066567	A-G	HET
SBS	Chr3	17076155	A-T	HET
SBS	Chr3	30316730	T-A	HET
SBS	Chr3	4817066	A-T	HET
SBS	Chr4	5534748	T-C	HET
SBS	Chr5	6905970	T-A	HET
SBS	Chr5	9888667	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17270
SBS	Chr6	4050324	T-A	Homo
SBS	Chr6	5866506	C-T	Homo
SBS	Chr6	6734561	A-G	HET
SBS	Chr6	7730869	T-C	HET
SBS	Chr7	14516030	T-C	HET
SBS	Chr7	4882831	G-A	Homo
SBS	Chr7	5674973	T-G	HET
SBS	Chr7	985734	A-G	HET
SBS	Chr8	11248763	C-T	HET
SBS	Chr8	1638068	T-C	HET
SBS	Chr8	28165605	G-A	HET
SBS	Chr9	1933489	T-G	Homo

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	13625779	13625782	3	LOC_Os12g23980
Deletion	Chr6	14338001	14385000	46999	7
Deletion	Chr10	15115353	15115361	8
Deletion	Chr7	16387053	16387062	9
Deletion	Chr7	21029613	21029614	1	LOC_Os07g35110
Deletion	Chr1	34359595	34359605	10

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	23954570	23954571	2
Insertion	Chr4	22357387	22357389	3
Insertion	Chr5	29945899	29945899	1
Insertion	Chr9	9768729	9768734	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15021629	15309180	2
Inversion	Chr10	15021632	15169705	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	130705	Chr2	35145551
Translocation	Chr12	13510871	Chr7	1293651
Translocation	Chr9	14795702	Chr7	5461185
Translocation	Chr11	14927480	Chr8	130715	LOC_Os11g26090
Translocation	Chr2	16659498	Chr1	23143179
Translocation	Chr11	21092303	Chr8	17496282	2

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