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Mutant Information

Mutant Name	FN2212-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2212-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13985196	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24830
SBS	Chr1	15646327	A-C	HET
SBS	Chr1	22778158	G-T	Homo
SBS	Chr1	33258881	G-A	Homo
SBS	Chr1	40166274	C-T	Homo
SBS	Chr1	7635626	T-A	HET
SBS	Chr1	8570019	A-G	HET
SBS	Chr10	18014287	T-A	HET
SBS	Chr10	7472398	T-C	Homo
SBS	Chr11	15052635	G-A	HET
SBS	Chr11	19143134	C-G	HET
SBS	Chr12	15327687	G-C	HET
SBS	Chr12	15402818	T-C	Homo
SBS	Chr12	5566626	G-T	Homo
SBS	Chr2	13656580	A-C	HET
SBS	Chr2	13740904	C-A	Homo
SBS	Chr2	20622561	T-G	Homo
SBS	Chr3	11642799	T-G	HET
SBS	Chr3	8373162	C-T	HET
SBS	Chr4	15979761	T-G	Homo
SBS	Chr4	22083923	G-A	HET
SBS	Chr4	22999105	G-A	HET
SBS	Chr4	3110770	A-C	Homo
SBS	Chr4	34768148	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g58440
SBS	Chr4	35433695	C-T	HET
SBS	Chr5	3607084	C-T	HET
SBS	Chr6	15636782	C-T	HET
SBS	Chr6	25687546	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42710
SBS	Chr6	7088558	G-A	HET
SBS	Chr7	18117584	T-G	HET
SBS	Chr7	72879	C-A	HET
SBS	Chr8	12840048	T-G	HET
SBS	Chr8	15710808	A-G	HET
SBS	Chr9	12007749	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g20040
SBS	Chr9	17825779	C-T	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	2096596	2096598	2
Deletion	Chr3	6996030	6996033	3	LOC_Os03g12950
Deletion	Chr1	9148787	9148798	11
Deletion	Chr8	12006373	12006375	2
Deletion	Chr8	12625001	12690000	64999	11
Deletion	Chr1	12927001	12951000	23999	3
Deletion	Chr1	13631342	13631355	13
Deletion	Chr12	13668555	13668560	5	LOC_Os12g24050
Deletion	Chr11	17907183	17907185	2
Deletion	Chr2	19034373	19034377	4	LOC_Os02g32220
Deletion	Chr10	19825680	19825682	2
Deletion	Chr5	24969001	24992000	22999	6
Deletion	Chr11	25218093	25218094	1
Deletion	Chr4	25639677	25639679	2
Deletion	Chr8	27589646	27589658	12
Deletion	Chr2	29281242	29281246	4	LOC_Os02g47860
Deletion	Chr4	34017743	34017744	1	LOC_Os04g57080

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	37365024	37365024	1
Insertion	Chr8	13996631	13996631	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8597048	8685847	2
Inversion	Chr10	18231524	18318638	2
Inversion	Chr10	18231530	18318652	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	8727301	Chr2	18595736	2
Translocation	Chr6	8728989	Chr2	18595746	2
Translocation	Chr11	22975268	Chr2	18690674
Translocation	Chr7	23409332	Chr1	39546788	2

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