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Mutant Information

Mutant NameFN2213-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN2213-S Alignment File
Seed AvailabilityYes [Order Seeds]
Phenotype
  • TO:0000430 (Germination Rate) = Normal (Between 75% and 125%)
For more information, please see this phenotype file
Mapping
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Variant Information

Single base substitutions: 32
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr115559298A-GHomo
SBSChr134903454C-GHomoNON_SYNONYMOUS_CODINGLOC_Os01g60340
SBSChr136978490C-THETNON_SYNONYMOUS_CODINGLOC_Os01g63740
SBSChr137277698A-CHomo
SBSChr140979259A-GHET
SBSChr101343460G-AHET
SBSChr1021875696T-AHET
SBSChr1113360856G-AHET
SBSChr1214186027C-GHET
SBSChr1214806126A-THET
SBSChr123188708C-THomo
SBSChr123188712G-THomo
SBSChr230006579T-CHET
SBSChr24213008T-GHET
SBSChr42205075A-GHET
SBSChr46258659C-THomo
SBSChr517156641A-CHET
SBSChr521741644C-AHET
SBSChr5816404T-CHET
SBSChr610993962C-THET
SBSChr630018688C-THET
SBSChr66118474A-THET
SBSChr67692814A-THomo
SBSChr713459656C-THET
SBSChr715882707T-CHET
SBSChr716026032T-AHET
SBSChr727246885A-GHET
SBSChr76445582A-THomo
SBSChr77563477C-AHET
SBSChr918645249T-CHET
SBSChr92163784C-THET
SBSChr94265638G-THETNON_SYNONYMOUS_CODINGLOC_Os09g08224

Deletions: 15
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr127206517206598
DeletionChr5251624125162443LOC_Os05g05160
DeletionChr6274276027427666
DeletionChr2422758242275853
DeletionChr4449516944951756
DeletionChr7615934561593461
DeletionChr7767786876778691
DeletionChr6774804777480481
DeletionChr291395059139653148
DeletionChr31479300114826000329993
DeletionChr1217350344173503451
DeletionChr529117705291177072
DeletionChr1294732822947330725
DeletionChr329744048297440557
DeletionChr332159685321596916

Insertions: 3
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr2155131581551316811
InsertionChr416655645166556451
InsertionChr6658255065825501

Inversions: 5
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr91180810311812773LOC_Os09g19734
InversionChr314693909147926782
InversionChr717120459180934292
InversionChr12978934330172941
InversionChr12978936829936094

Translocations: 7
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr910333788Chr314825371
TranslocationChr910333816Chr3147926912
TranslocationChr911812786Chr2231650232
TranslocationChr911843574Chr217768332
TranslocationChr913456025Chr49486022
TranslocationChr1016525735Chr451412652
TranslocationChr419146655Chr3176219552