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Mutant Information |
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Mutant Name | FN2213-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2213-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) | ![]() |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 15559298 | A-G | Homo | ||
SBS | Chr1 | 34903454 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g60340 |
SBS | Chr1 | 36978490 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63740 |
SBS | Chr1 | 37277698 | A-C | Homo | ||
SBS | Chr1 | 40979259 | A-G | HET | ||
SBS | Chr10 | 1343460 | G-A | HET | ||
SBS | Chr10 | 21875696 | T-A | HET | ||
SBS | Chr11 | 13360856 | G-A | HET | ||
SBS | Chr12 | 14186027 | C-G | HET | ||
SBS | Chr12 | 14806126 | A-T | HET | ||
SBS | Chr12 | 3188708 | C-T | Homo | ||
SBS | Chr12 | 3188712 | G-T | Homo | ||
SBS | Chr2 | 30006579 | T-C | HET | ||
SBS | Chr2 | 4213008 | T-G | HET | ||
SBS | Chr4 | 2205075 | A-G | HET | ||
SBS | Chr4 | 6258659 | C-T | Homo | ||
SBS | Chr5 | 17156641 | A-C | HET | ||
SBS | Chr5 | 21741644 | C-A | HET | ||
SBS | Chr5 | 816404 | T-C | HET | ||
SBS | Chr6 | 10993962 | C-T | HET | ||
SBS | Chr6 | 30018688 | C-T | HET | ||
SBS | Chr6 | 6118474 | A-T | HET | ||
SBS | Chr6 | 7692814 | A-T | Homo | ||
SBS | Chr7 | 13459656 | C-T | HET | ||
SBS | Chr7 | 15882707 | T-C | HET | ||
SBS | Chr7 | 16026032 | T-A | HET | ||
SBS | Chr7 | 27246885 | A-G | HET | ||
SBS | Chr7 | 6445582 | A-T | Homo | ||
SBS | Chr7 | 7563477 | C-A | HET | ||
SBS | Chr9 | 18645249 | T-C | HET | ||
SBS | Chr9 | 2163784 | C-T | HET | ||
SBS | Chr9 | 4265638 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08224 |
Deletions: 15
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr12 | 720651 | 720659 | 8 | |
Deletion | Chr5 | 2516241 | 2516244 | 3 | LOC_Os05g05160 |
Deletion | Chr6 | 2742760 | 2742766 | 6 | |
Deletion | Chr2 | 4227582 | 4227585 | 3 | |
Deletion | Chr4 | 4495169 | 4495175 | 6 | |
Deletion | Chr7 | 6159345 | 6159346 | 1 | |
Deletion | Chr7 | 7677868 | 7677869 | 1 | |
Deletion | Chr6 | 7748047 | 7748048 | 1 | |
Deletion | Chr2 | 9139505 | 9139653 | 148 | |
Deletion | Chr3 | 14793001 | 14826000 | 32999 | 3 |
Deletion | Chr12 | 17350344 | 17350345 | 1 | |
Deletion | Chr5 | 29117705 | 29117707 | 2 | |
Deletion | Chr1 | 29473282 | 29473307 | 25 | |
Deletion | Chr3 | 29744048 | 29744055 | 7 | |
Deletion | Chr3 | 32159685 | 32159691 | 6 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 15513158 | 15513168 | 11 | |
Insertion | Chr4 | 16655645 | 16655645 | 1 | |
Insertion | Chr6 | 6582550 | 6582550 | 1 |
Inversions: 5
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 11808103 | 11812773 | LOC_Os09g19734 |
Inversion | Chr3 | 14693909 | 14792678 | 2 |
Inversion | Chr7 | 17120459 | 18093429 | 2 |
Inversion | Chr1 | 29789343 | 30172941 | |
Inversion | Chr1 | 29789368 | 29936094 |
Translocations: 7
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 10333788 | Chr3 | 14825371 | |
Translocation | Chr9 | 10333816 | Chr3 | 14792691 | 2 |
Translocation | Chr9 | 11812786 | Chr2 | 23165023 | 2 |
Translocation | Chr9 | 11843574 | Chr2 | 17768332 | |
Translocation | Chr9 | 13456025 | Chr4 | 9486022 | |
Translocation | Chr10 | 16525735 | Chr4 | 5141265 | 2 |
Translocation | Chr4 | 19146655 | Chr3 | 17621955 | 2 |