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Mutant Information

Mutant Name	FN2213-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2213-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15559298	A-G	Homo
SBS	Chr1	34903454	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g60340
SBS	Chr1	36978490	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63740
SBS	Chr1	37277698	A-C	Homo
SBS	Chr1	40979259	A-G	HET
SBS	Chr10	1343460	G-A	HET
SBS	Chr10	21875696	T-A	HET
SBS	Chr11	13360856	G-A	HET
SBS	Chr12	14186027	C-G	HET
SBS	Chr12	14806126	A-T	HET
SBS	Chr12	3188708	C-T	Homo
SBS	Chr12	3188712	G-T	Homo
SBS	Chr2	30006579	T-C	HET
SBS	Chr2	4213008	T-G	HET
SBS	Chr4	2205075	A-G	HET
SBS	Chr4	6258659	C-T	Homo
SBS	Chr5	17156641	A-C	HET
SBS	Chr5	21741644	C-A	HET
SBS	Chr5	816404	T-C	HET
SBS	Chr6	10993962	C-T	HET
SBS	Chr6	30018688	C-T	HET
SBS	Chr6	6118474	A-T	HET
SBS	Chr6	7692814	A-T	Homo
SBS	Chr7	13459656	C-T	HET
SBS	Chr7	15882707	T-C	HET
SBS	Chr7	16026032	T-A	HET
SBS	Chr7	27246885	A-G	HET
SBS	Chr7	6445582	A-T	Homo
SBS	Chr7	7563477	C-A	HET
SBS	Chr9	18645249	T-C	HET
SBS	Chr9	2163784	C-T	HET
SBS	Chr9	4265638	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08224

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	720651	720659	8
Deletion	Chr5	2516241	2516244	3	LOC_Os05g05160
Deletion	Chr6	2742760	2742766	6
Deletion	Chr2	4227582	4227585	3
Deletion	Chr4	4495169	4495175	6
Deletion	Chr7	6159345	6159346	1
Deletion	Chr7	7677868	7677869	1
Deletion	Chr6	7748047	7748048	1
Deletion	Chr2	9139505	9139653	148
Deletion	Chr3	14793001	14826000	32999	3
Deletion	Chr12	17350344	17350345	1
Deletion	Chr5	29117705	29117707	2
Deletion	Chr1	29473282	29473307	25
Deletion	Chr3	29744048	29744055	7
Deletion	Chr3	32159685	32159691	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	15513158	15513168	11
Insertion	Chr4	16655645	16655645	1
Insertion	Chr6	6582550	6582550	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11808103	11812773	LOC_Os09g19734
Inversion	Chr3	14693909	14792678	2
Inversion	Chr7	17120459	18093429	2
Inversion	Chr1	29789343	30172941
Inversion	Chr1	29789368	29936094

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10333788	Chr3	14825371
Translocation	Chr9	10333816	Chr3	14792691	2
Translocation	Chr9	11812786	Chr2	23165023	2
Translocation	Chr9	11843574	Chr2	17768332
Translocation	Chr9	13456025	Chr4	9486022
Translocation	Chr10	16525735	Chr4	5141265	2
Translocation	Chr4	19146655	Chr3	17621955	2

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