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Mutant Information

Mutant Name	FN2216-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2216-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26325335	T-C	HET
SBS	Chr1	34609	C-T	HET
SBS	Chr1	5251523	C-T	Homo
SBS	Chr10	3919983	G-A	HET
SBS	Chr10	5383927	G-A	HET
SBS	Chr10	9831159	G-T	HET
SBS	Chr12	13860541	G-A	HET
SBS	Chr12	190322	G-A	HET
SBS	Chr2	1831365	G-A	HET
SBS	Chr2	27555315	T-C	HET
SBS	Chr2	8217921	T-A	HET
SBS	Chr3	13949605	G-A	HET
SBS	Chr3	2086736	C-G	HET
SBS	Chr3	32440463	G-C	HET
SBS	Chr4	10732337	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19290
SBS	Chr5	10757928	A-G	HET
SBS	Chr5	19481415	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33220
SBS	Chr5	20677196	T-G	HET
SBS	Chr5	21338325	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g36040
SBS	Chr5	7424853	C-T	HET
SBS	Chr6	14825111	G-A	HET
SBS	Chr6	163629	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g01250
SBS	Chr6	163637	C-T	HET	STOP_GAINED	LOC_Os06g01250
SBS	Chr6	20565593	G-A	Homo
SBS	Chr7	10439028	C-A	HET
SBS	Chr7	11611795	T-C	HET
SBS	Chr7	23745672	A-G	HET
SBS	Chr7	5011256	A-G	Homo
SBS	Chr7	9677332	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16510
SBS	Chr8	20625369	G-T	HET
SBS	Chr8	23465305	G-A	Homo
SBS	Chr8	24894075	G-A	HET

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1907262	1907267	5
Deletion	Chr6	3277036	3277038	2
Deletion	Chr5	3955001	4006000	50999	8
Deletion	Chr6	3971472	3971504	32
Deletion	Chr12	4657687	4657689	2
Deletion	Chr4	5673327	5673329	2
Deletion	Chr3	6024347	6024349	2
Deletion	Chr1	6399637	6399643	6
Deletion	Chr4	7633806	7633808	2
Deletion	Chr11	8005090	8005095	5
Deletion	Chr6	8667667	8667675	8
Deletion	Chr11	11032661	11032674	13
Deletion	Chr12	11706846	11706847	1
Deletion	Chr11	16747487	16747497	10
Deletion	Chr10	17666955	17666956	1
Deletion	Chr4	20738109	20738135	26
Deletion	Chr1	22164078	22164079	1	LOC_Os01g39380
Deletion	Chr6	23614542	23614547	5
Deletion	Chr3	24360222	24360228	6
Deletion	Chr11	25007877	25007881	4
Deletion	Chr5	26877872	26877876	4
Deletion	Chr3	28776616	28776619	3	LOC_Os03g50430
Deletion	Chr6	29173841	29173844	3
Deletion	Chr3	29294105	29294114	9
Deletion	Chr4	31031787	31031806	19
Deletion	Chr1	31835628	31835632	4	LOC_Os01g55300
Deletion	Chr1	34930694	34930695	1
Deletion	Chr1	35676750	35676754	4	LOC_Os01g61660

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	12327912	12327959	48
Insertion	Chr5	29648206	29648229	24

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2236915	2418634

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	164478	Chr5	14966498
Translocation	Chr7	1706564	Chr2	35082579	2
Translocation	Chr7	3116022	Chr5	24535237	2
Translocation	Chr9	5249815	Chr7	2236906	LOC_Os09g09700
Translocation	Chr11	13608124	Chr5	15429066
Translocation	Chr4	15518915	Chr2	22225603
Translocation	Chr8	16458351	Chr1	26987353	2

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