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Mutant Information

Mutant Name	FN2220-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2220-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20998790	C-T	HET
SBS	Chr1	22213372	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39420
SBS	Chr1	23996758	A-G	HET
SBS	Chr1	25380269	A-T	HET
SBS	Chr1	39495632	C-T	HET
SBS	Chr2	5985611	T-A	HET
SBS	Chr2	6183616	C-G	Homo
SBS	Chr2	27657431	G-A	HET
SBS	Chr3	464007	A-G	HET
SBS	Chr3	1689099	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g03770
SBS	Chr3	14496124	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25360
SBS	Chr4	10724222	G-A	HET
SBS	Chr4	20860276	A-G	HET
SBS	Chr5	4220763	C-T	HET
SBS	Chr5	11929697	G-T	Homo
SBS	Chr5	24356797	G-A	HET
SBS	Chr5	24671935	T-A	HET
SBS	Chr5	25641595	G-T	HET
SBS	Chr5	27910689	T-C	Homo
SBS	Chr5	29030789	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g50640
SBS	Chr6	294979	G-A	HET
SBS	Chr6	17656727	C-T	HET
SBS	Chr6	20507710	C-A	HET
SBS	Chr6	21488599	C-G	HET
SBS	Chr6	25172377	C-A	HET
SBS	Chr6	29505563	G-A	Homo
SBS	Chr7	12831509	G-A	HET
SBS	Chr7	14917859	A-G	Homo
SBS	Chr7	18838598	A-G	HET
SBS	Chr8	10092636	C-T	HET
SBS	Chr8	15975824	G-C	HET
SBS	Chr9	5869345	A-G	HET
SBS	Chr9	11411653	A-G	HET
SBS	Chr9	13207463	T-G	Homo
SBS	Chr9	15272247	C-T	Homo
SBS	Chr9	17922486	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g29470
SBS	Chr10	33570	G-T	HET
SBS	Chr10	14779502	T-A	HET
SBS	Chr11	9807806	T-C	Homo
SBS	Chr11	10286058	G-A	Homo
SBS	Chr12	2183457	C-T	Homo
SBS	Chr12	12243289	C-T	HET
SBS	Chr12	22556478	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g36790

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	484892	484893	1
Deletion	Chr10	502814	502825	11
Deletion	Chr3	3128948	3128952	4
Deletion	Chr5	5605005	5605006	1
Deletion	Chr12	6718143	6718146	3
Deletion	Chr6	7144236	7144243	7
Deletion	Chr5	8951413	8951419	6
Deletion	Chr8	13286209	13286210	1
Deletion	Chr5	13803373	13803382	9
Deletion	Chr9	15754385	15754395	10	LOC_Os09g26144
Deletion	Chr3	16210145	16210154	9
Deletion	Chr11	17845433	17845436	3	LOC_Os11g30650
Deletion	Chr8	18996932	18996939	7	LOC_Os08g30770
Deletion	Chr11	19133001	19153000	19999	4
Deletion	Chr7	21618233	21618236	3	LOC_Os07g36170
Deletion	Chr5	26328174	26328175	1
Deletion	Chr8	26442291	26442293	2
Deletion	Chr7	26578252	26578258	6
Deletion	Chr1	27774923	27774924	1
Deletion	Chr3	32697778	32697788	10
Deletion	Chr1	39295745	39295749	4	LOC_Os01g67590

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	13147217	13147218	2
Insertion	Chr10	19933858	19933859	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1589888	2290729	LOC_Os03g03610
Inversion	Chr3	1589889	2290724	LOC_Os03g03610
Inversion	Chr10	12468609	12622696	2
Inversion	Chr10	12468610	12622696	2
Inversion	Chr11	19133537	19670974
Inversion	Chr11	19153012	19670975
Inversion	Chr3	19557795	19933673
Inversion	Chr3	19557801	19933678

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	435669	Chr11	393156	2
Translocation	Chr10	22645593	Chr7	17031447	2
Translocation	Chr10	22645600	Chr7	17031258	2

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