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Mutant Information

Mutant Name	FN2221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2221-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14961340	C-G	Homo
SBS	Chr1	35116844	T-G	HET
SBS	Chr1	37139510	C-A	HET
SBS	Chr10	16308307	A-G	HET
SBS	Chr11	17366254	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29890
SBS	Chr11	7472760	T-C	Homo
SBS	Chr12	11384330	A-G	Homo
SBS	Chr12	11519557	A-C	Homo
SBS	Chr12	12858705	C-T	Homo
SBS	Chr12	20237713	C-G	Homo
SBS	Chr12	22505181	G-T	Homo
SBS	Chr12	24290499	A-G	Homo
SBS	Chr12	674271	G-A	HET
SBS	Chr12	7539377	T-G	HET
SBS	Chr2	17671685	C-T	HET
SBS	Chr2	29632465	G-T	HET
SBS	Chr2	7265938	T-A	HET
SBS	Chr3	15337903	T-C	HET
SBS	Chr3	18093338	G-A	HET
SBS	Chr3	23341136	T-G	Homo
SBS	Chr3	33248043	G-A	HET
SBS	Chr4	13532525	A-C	HET
SBS	Chr4	7503183	T-C	HET
SBS	Chr4	9918106	T-A	HET
SBS	Chr5	2643426	C-T	HET
SBS	Chr5	8654875	C-T	Homo
SBS	Chr6	14169577	T-C	HET
SBS	Chr7	14349810	T-C	Homo
SBS	Chr7	15455767	C-T	HET
SBS	Chr7	7468840	C-T	Homo
SBS	Chr8	21388797	G-T	HET
SBS	Chr8	21882067	C-T	HET
SBS	Chr8	8049933	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	3360292	G-A	HET
SBS	Chr9	3360293	G-A	HET
SBS	Chr9	3391239	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g07000
SBS	Chr9	3633960	T-G	HET
SBS	Chr9	4939789	T-C	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	728339	728347	8
Deletion	Chr10	742798	742802	4
Deletion	Chr12	2557193	2557206	13	LOC_Os12g05570
Deletion	Chr11	3602472	3602502	30
Deletion	Chr10	4242689	4242691	2
Deletion	Chr10	6197356	6197362	6	LOC_Os10g11180
Deletion	Chr1	8466447	8466454	7
Deletion	Chr4	10158887	10158891	4
Deletion	Chr5	14116988	14116989	1
Deletion	Chr2	15691400	15691403	3
Deletion	Chr2	16982001	17005000	22999	2
Deletion	Chr4	22188057	22188070	13
Deletion	Chr2	22546526	22546534	8
Deletion	Chr2	24685866	24685867	1
Deletion	Chr2	25964011	25964031	20
Deletion	Chr2	27767682	27767683	1	LOC_Os02g45650
Deletion	Chr5	27990470	27990478	8	LOC_Os05g48840

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23047852	23047853	2
Insertion	Chr1	31479258	31479259	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	15207041	15403754	LOC_Os07g26440
Inversion	Chr7	15403763	15661930	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11743547	Chr5	19043121	2
Translocation	Chr11	22117747	Chr8	2861108	2
Translocation	Chr11	27264242	Chr9	12172731	2

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