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Mutant Information |
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Mutant Name | FN2222-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2222-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 20
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 6743728 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g12340 |
SBS | Chr1 | 13604706 | C-A | HET | ||
SBS | Chr1 | 13629528 | A-G | HET | ||
SBS | Chr3 | 7830503 | C-T | Homo | ||
SBS | Chr5 | 13768066 | A-G | HET | ||
SBS | Chr6 | 5639357 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g10810 |
SBS | Chr6 | 19809475 | G-A | HET | ||
SBS | Chr7 | 12107636 | G-A | HET | ||
SBS | Chr7 | 24667030 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g41200 |
SBS | Chr8 | 5237628 | A-G | HET | ||
SBS | Chr8 | 16832612 | G-C | Homo | ||
SBS | Chr10 | 8946499 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g17700 |
SBS | Chr10 | 12342703 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24090 |
SBS | Chr10 | 15303598 | A-G | Homo | ||
SBS | Chr10 | 15307506 | T-A | Homo | ||
SBS | Chr10 | 15307507 | T-A | Homo | ||
SBS | Chr11 | 11641945 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g20150 |
SBS | Chr11 | 12905071 | T-C | HET | ||
SBS | Chr11 | 24271250 | G-A | HET | ||
SBS | Chr12 | 20424792 | G-A | Homo |
Deletions: 17
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr3 | 1354217 | 1354218 | 1 | |
Deletion | Chr10 | 4082510 | 4082523 | 13 | |
Deletion | Chr10 | 5050122 | 5050128 | 6 | LOC_Os10g09350 |
Deletion | Chr10 | 6484377 | 6484381 | 4 | |
Deletion | Chr10 | 7591143 | 7591147 | 4 | |
Deletion | Chr12 | 8551008 | 8551019 | 11 | |
Deletion | Chr10 | 11154540 | 11154547 | 7 | LOC_Os10g21730 |
Deletion | Chr3 | 11576327 | 11576328 | 1 | |
Deletion | Chr9 | 12894934 | 12894935 | 1 | |
Deletion | Chr2 | 13153053 | 13153058 | 5 | |
Deletion | Chr4 | 14743891 | 14743892 | 1 | LOC_Os04g25440 |
Deletion | Chr3 | 16258389 | 16258394 | 5 | |
Deletion | Chr12 | 21679165 | 21679166 | 1 | |
Deletion | Chr2 | 25238449 | 25238450 | 1 | |
Deletion | Chr4 | 25772639 | 25772641 | 2 | |
Deletion | Chr1 | 30678355 | 30678433 | 78 | |
Deletion | Chr2 | 35174873 | 35174876 | 3 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 1482413 | 1482414 | 2 | |
Insertion | Chr12 | 21760065 | 21760066 | 2 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
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Inversion | Chr4 | 12825076 | 13066828 | LOC_Os04g22640 |
Inversion | Chr4 | 12825080 | 13066827 | LOC_Os04g22640 |
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 15900258 | Chr3 | 26025218 | |
Translocation | Chr6 | 21950536 | Chr1 | 13413515 | |
Translocation | Chr12 | 22800140 | Chr9 | 4757324 | LOC_Os12g37180 |