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Mutant Information

Mutant Name	FN2222-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2222-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13604706	C-A	HET
SBS	Chr1	13629528	A-G	HET
SBS	Chr1	6743728	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12340
SBS	Chr10	12342703	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24090
SBS	Chr10	15303598	A-G	Homo
SBS	Chr10	15307506	T-A	Homo
SBS	Chr10	15307507	T-A	Homo
SBS	Chr10	8946499	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17700
SBS	Chr11	11641945	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g20150
SBS	Chr11	12905071	T-C	HET
SBS	Chr11	24271250	G-A	HET
SBS	Chr12	20424792	G-A	Homo
SBS	Chr3	7830503	C-T	Homo
SBS	Chr5	13768066	A-G	HET
SBS	Chr6	19809475	G-A	HET
SBS	Chr6	5639357	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g10810
SBS	Chr7	12107636	G-A	HET
SBS	Chr7	24667030	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g41200
SBS	Chr8	16832612	G-C	Homo
SBS	Chr8	5237628	A-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1354217	1354218	1
Deletion	Chr10	4082510	4082523	13
Deletion	Chr10	5050122	5050128	6	LOC_Os10g09350
Deletion	Chr10	6484377	6484381	4
Deletion	Chr10	7591143	7591147	4
Deletion	Chr12	8551008	8551019	11
Deletion	Chr10	11154540	11154547	7	LOC_Os10g21730
Deletion	Chr3	11576327	11576328	1
Deletion	Chr9	12894934	12894935	1
Deletion	Chr2	13153053	13153058	5
Deletion	Chr4	14743891	14743892	1	LOC_Os04g25440
Deletion	Chr3	16258389	16258394	5
Deletion	Chr12	21679165	21679166	1
Deletion	Chr2	25238449	25238450	1
Deletion	Chr4	25772639	25772641	2
Deletion	Chr1	30678355	30678433	78
Deletion	Chr2	35174873	35174876	3

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	1482413	1482414	2
Insertion	Chr12	21760065	21760066	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	12825076	13066828	LOC_Os04g22640
Inversion	Chr4	12825080	13066827	LOC_Os04g22640

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	15900258	Chr3	26025218
Translocation	Chr6	21950536	Chr1	13413515
Translocation	Chr12	22800140	Chr9	4757324	LOC_Os12g37180

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