Search Results
| Mutant Information |
|---|
| Mutant Name | FN2240-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2240-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 6648054 | T-C | Homo | ||
| SBS | Chr1 | 16503949 | G-T | HET | ||
| SBS | Chr1 | 27220555 | G-A | HET | ||
| SBS | Chr1 | 35109119 | G-C | HET | ||
| SBS | Chr2 | 14570547 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g25090 |
| SBS | Chr3 | 23671801 | C-T | Homo | ||
| SBS | Chr4 | 14804802 | C-T | Homo | ||
| SBS | Chr4 | 22909708 | A-T | HET | ||
| SBS | Chr6 | 11894982 | C-T | HET | ||
| SBS | Chr6 | 11929943 | A-T | HET | START_LOST | LOC_Os06g20710 |
| SBS | Chr6 | 12616423 | G-A | HET | ||
| SBS | Chr6 | 25475795 | G-A | HET | ||
| SBS | Chr6 | 27369056 | C-T | HET | ||
| SBS | Chr6 | 27369057 | G-T | HET | ||
| SBS | Chr7 | 5710030 | A-T | HET | ||
| SBS | Chr7 | 5710031 | A-T | HET | ||
| SBS | Chr7 | 6694687 | A-G | HET | ||
| SBS | Chr7 | 24195456 | C-T | HET | ||
| SBS | Chr8 | 7282394 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g12360 |
| SBS | Chr8 | 10507575 | C-T | HET | ||
| SBS | Chr8 | 18909361 | G-A | Homo | ||
| SBS | Chr10 | 236261 | C-A | Homo | ||
| SBS | Chr10 | 16443073 | G-A | HET | ||
| SBS | Chr10 | 20151391 | T-C | HET | ||
| SBS | Chr11 | 2450599 | A-T | HET | ||
| SBS | Chr11 | 2450602 | C-G | HET | ||
| SBS | Chr11 | 4502531 | C-G | HET | ||
| SBS | Chr12 | 13030660 | A-C | HET | ||
| SBS | Chr12 | 13509693 | T-C | HET | ||
| SBS | Chr12 | 18896636 | T-A | HET | ||
| SBS | Chr12 | 22197572 | G-A | HET | ||
| SBS | Chr12 | 22269512 | C-A | Homo |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 2507302 | 2507304 | 2 | LOC_Os01g05320 |
| Deletion | Chr6 | 3408751 | 3408755 | 4 | LOC_Os06g07130 |
| Deletion | Chr12 | 3909015 | 3909017 | 2 | |
| Deletion | Chr9 | 4630570 | 4630694 | 124 | |
| Deletion | Chr2 | 4775515 | 4775523 | 8 | |
| Deletion | Chr6 | 7018001 | 7062000 | 43999 | 9 |
| Deletion | Chr6 | 7136858 | 7136870 | 12 | LOC_Os06g13030 |
| Deletion | Chr8 | 7742001 | 7865000 | 122999 | 20 |
| Deletion | Chr8 | 7928001 | 7975000 | 46999 | 6 |
| Deletion | Chr12 | 8043001 | 8058000 | 14999 | 2 |
| Deletion | Chr10 | 9255123 | 9255124 | 1 | |
| Deletion | Chr1 | 9913280 | 9913285 | 5 | |
| Deletion | Chr11 | 17194333 | 17194335 | 2 | |
| Deletion | Chr4 | 18860682 | 18860691 | 9 | |
| Deletion | Chr1 | 20010086 | 20010087 | 1 | |
| Deletion | Chr4 | 29347256 | 29347257 | 1 | |
| Deletion | Chr2 | 31065566 | 31065569 | 3 | |
| Deletion | Chr4 | 35405681 | 35405689 | 8 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 15715312 | 15715312 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 8054590 | 8702616 | LOC_Os12g14180 |
| Inversion | Chr12 | 8665163 | 8702617 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5179131 | Chr8 | 15024737 | |
| Translocation | Chr12 | 8566889 | Chr10 | 2106336 | |
| Translocation | Chr7 | 9604616 | Chr3 | 25732270 | |
| Translocation | Chr4 | 12144040 | Chr2 | 8032110 | |
| Translocation | Chr12 | 16959525 | Chr8 | 9984393 | 2 |