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| Mutant Information |
|---|
| Mutant Name | FN2254-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2254-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16798379 | C-T | HET | ||
| SBS | Chr1 | 17281031 | T-A | HET | ||
| SBS | Chr1 | 29637203 | C-T | HET | ||
| SBS | Chr1 | 30900113 | T-C | HET | ||
| SBS | Chr1 | 33777610 | A-T | HET | ||
| SBS | Chr10 | 142861 | G-A | HET | ||
| SBS | Chr10 | 14833031 | T-C | Homo | ||
| SBS | Chr10 | 18070175 | G-A | HET | ||
| SBS | Chr10 | 18114554 | T-G | HET | ||
| SBS | Chr10 | 22640 | C-A | HET | ||
| SBS | Chr12 | 8421537 | C-T | Homo | ||
| SBS | Chr2 | 24757305 | T-G | HET | ||
| SBS | Chr2 | 6171212 | C-T | Homo | ||
| SBS | Chr3 | 11018106 | G-A | HET | ||
| SBS | Chr3 | 14684400 | C-A | Homo | ||
| SBS | Chr3 | 20113392 | T-C | Homo | ||
| SBS | Chr3 | 20113393 | C-A | Homo | ||
| SBS | Chr3 | 34894370 | C-T | Homo | ||
| SBS | Chr3 | 439268 | G-T | HET | ||
| SBS | Chr4 | 13220369 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23220 |
| SBS | Chr4 | 13756517 | T-C | HET | ||
| SBS | Chr4 | 23624265 | G-T | HET | ||
| SBS | Chr5 | 13034788 | A-T | Homo | ||
| SBS | Chr5 | 21868667 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g37380 |
| SBS | Chr5 | 27016928 | G-T | HET | ||
| SBS | Chr6 | 17245861 | T-G | HET | ||
| SBS | Chr6 | 29169784 | A-G | HET | ||
| SBS | Chr7 | 18779157 | G-A | HET | ||
| SBS | Chr7 | 25461510 | G-A | HET | ||
| SBS | Chr7 | 9804610 | C-T | HET | ||
| SBS | Chr8 | 4629631 | A-G | HET | ||
| SBS | Chr8 | 8807498 | C-T | Homo | ||
| SBS | Chr9 | 840483 | T-A | HET |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 3759001 | 3825000 | 65999 | 8 |
| Deletion | Chr5 | 7263194 | 7263195 | 1 | |
| Deletion | Chr1 | 10261626 | 10261637 | 11 | |
| Deletion | Chr6 | 15284637 | 15284638 | 1 | |
| Deletion | Chr5 | 17534054 | 17534055 | 1 | LOC_Os05g30250 |
| Deletion | Chr3 | 19349752 | 19349753 | 1 | LOC_Os03g33870 |
| Deletion | Chr4 | 32230947 | 32230951 | 4 | LOC_Os04g54080 |
Insertions: 7
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 959677 | 963747 | |
| Inversion | Chr1 | 3358918 | 3510062 | 2 |
| Inversion | Chr1 | 3358930 | 3825235 | LOC_Os01g07120 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6225181 | Chr1 | 9028874 | 2 |
| Translocation | Chr8 | 6761552 | Chr4 | 3220843 | |
| Translocation | Chr9 | 7499428 | Chr6 | 18640340 | |
| Translocation | Chr8 | 9335286 | Chr2 | 19023541 | 2 |
| Translocation | Chr11 | 11508165 | Chr8 | 19974189 | 2 |
| Translocation | Chr7 | 12534275 | Chr6 | 18214712 | |
| Translocation | Chr12 | 15481492 | Chr8 | 5914743 | |
| Translocation | Chr12 | 16182369 | Chr4 | 32905476 | 2 |
| Translocation | Chr6 | 17022414 | Chr2 | 8917832 | |
| Translocation | Chr7 | 28487349 | Chr2 | 32873287 | |
| Translocation | Chr4 | 32065675 | Chr3 | 35082623 | LOC_Os04g53810 |