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| Mutant Information |
|---|
| Mutant Name | FN2262-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2262-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 18
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 35308496 | G-A | Homo | ||
| SBS | Chr10 | 13496673 | T-C | Homo | ||
| SBS | Chr10 | 19783025 | T-C | HET | ||
| SBS | Chr11 | 10015545 | G-A | HET | ||
| SBS | Chr11 | 12007097 | T-C | HET | ||
| SBS | Chr11 | 18758358 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g31910 |
| SBS | Chr11 | 805086 | T-A | HET | ||
| SBS | Chr12 | 15460409 | A-G | HET | ||
| SBS | Chr2 | 21882567 | A-T | HET | ||
| SBS | Chr2 | 9271024 | G-C | HET | ||
| SBS | Chr5 | 11050555 | G-T | Homo | ||
| SBS | Chr5 | 27279583 | T-G | Homo | ||
| SBS | Chr5 | 5122040 | C-T | HET | ||
| SBS | Chr7 | 5627678 | C-T | HET | ||
| SBS | Chr8 | 11962951 | T-C | HET | ||
| SBS | Chr8 | 2120671 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g04320 |
| SBS | Chr8 | 6782385 | G-A | Homo | ||
| SBS | Chr9 | 19935482 | G-A | HET |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 917028 | 917029 | 1 | |
| Deletion | Chr9 | 1561055 | 1561056 | 1 | |
| Deletion | Chr12 | 1839001 | 1858000 | 18999 | 3 |
| Deletion | Chr4 | 4458238 | 4458245 | 7 | |
| Deletion | Chr2 | 5300004 | 5300005 | 1 | |
| Deletion | Chr12 | 7964001 | 8092000 | 127999 | 24 |
| Deletion | Chr12 | 8095001 | 8234000 | 138999 | 18 |
| Deletion | Chr12 | 8237001 | 8260000 | 22999 | 4 |
| Deletion | Chr12 | 8268001 | 8441000 | 172999 | 23 |
| Deletion | Chr5 | 9028919 | 9028940 | 21 | LOC_Os05g15990 |
| Deletion | Chr12 | 9115534 | 9115536 | 2 | LOC_Os12g16000 |
| Deletion | Chr7 | 9825035 | 9825036 | 1 | LOC_Os07g16750 |
| Deletion | Chr12 | 10582899 | 10582915 | 16 | |
| Deletion | Chr5 | 13536625 | 13536630 | 5 | |
| Deletion | Chr6 | 14903696 | 14903707 | 11 | |
| Deletion | Chr5 | 15182701 | 15182712 | 11 | |
| Deletion | Chr8 | 17260960 | 17260962 | 2 | |
| Deletion | Chr2 | 18839936 | 18839945 | 9 | LOC_Os02g31890 |
| Deletion | Chr12 | 19555602 | 19555603 | 1 | LOC_Os12g32420 |
| Deletion | Chr3 | 19955001 | 19970000 | 14999 | 4 |
| Deletion | Chr3 | 19981001 | 20060000 | 78999 | 12 |
| Deletion | Chr8 | 24565869 | 24565870 | 1 | |
| Deletion | Chr11 | 27393764 | 27393767 | 3 | |
| Deletion | Chr4 | 31972778 | 31972779 | 1 | LOC_Os04g53640 |
| Deletion | Chr1 | 36315001 | 36374000 | 58999 | 10 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 22461580 | 22461584 | 5 | |
| Insertion | Chr3 | 29440814 | 29440815 | 2 | |
| Insertion | Chr7 | 13579336 | 13579336 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 38688153 | 39217473 | 2 |
| Inversion | Chr1 | 38688168 | 39217489 | 2 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 3844939 | Chr3 | 13382505 |