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Mutant Information

Mutant Name	FN2280-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2280-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19212925	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34800
SBS	Chr1	21559495	T-C	HET
SBS	Chr10	13339703	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g25740
SBS	Chr10	7335903	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g13550
SBS	Chr10	7335904	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g13550
SBS	Chr11	311440	T-G	HET
SBS	Chr12	14761509	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g25500
SBS	Chr12	3013561	A-C	Homo
SBS	Chr2	28207494	G-A	HET
SBS	Chr2	33034313	C-T	HET
SBS	Chr3	17132460	A-T	HET
SBS	Chr3	28607123	C-T	Homo
SBS	Chr3	33127137	C-A	Homo
SBS	Chr4	14908995	C-T	HET
SBS	Chr4	1605980	G-A	HET
SBS	Chr4	7316267	C-T	HET
SBS	Chr4	7373182	G-T	HET
SBS	Chr5	13843638	C-T	HET
SBS	Chr5	26198713	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45100
SBS	Chr5	4999906	T-C	HET
SBS	Chr5	6519464	T-A	HET
SBS	Chr5	7232266	T-C	HET
SBS	Chr5	9645834	C-T	HET
SBS	Chr6	11037100	C-T	HET
SBS	Chr6	12318935	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	616301	A-G	HET
SBS	Chr7	18984209	A-T	Homo

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	4862726	4862729	3	LOC_Os11g09130
Deletion	Chr11	9155435	9155464	29
Deletion	Chr2	11757956	11757957	1
Deletion	Chr2	12005596	12005604	8
Deletion	Chr2	19687606	19687610	4
Deletion	Chr8	27430729	27430732	3
Deletion	Chr11	28563459	28563460	1
Deletion	Chr5	29073001	29091000	17999	2
Deletion	Chr2	33000808	33000809	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	23290491	23290491	1
Insertion	Chr5	11898000	11898000	1
Insertion	Chr6	21030804	21030805	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	13765967	14435842	LOC_Os12g24170
Inversion	Chr12	13765972	14435843	LOC_Os12g24170
Inversion	Chr11	22608264	22983611
Inversion	Chr11	22983595	23177549	2
Inversion	Chr11	22983611	23177553	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	8178750	Chr3	28268378
Translocation	Chr12	13343394	Chr3	13647239
Translocation	Chr9	21246712	Chr2	18115022
Translocation	Chr4	32008238	Chr3	35833258

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