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| Mutant Information |
|---|
| Mutant Name | FN2314 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2314 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17347012 | T-C | HET | ||
| SBS | Chr1 | 28720672 | G-A | Homo | ||
| SBS | Chr1 | 39991209 | C-A | HET | ||
| SBS | Chr1 | 43151205 | A-G | HET | ||
| SBS | Chr10 | 6470604 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g11702 |
| SBS | Chr10 | 7073123 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12690 |
| SBS | Chr11 | 22856928 | A-G | HET | ||
| SBS | Chr12 | 11124487 | C-T | HET | ||
| SBS | Chr12 | 15643040 | C-T | HET | ||
| SBS | Chr12 | 17638020 | T-A | HET | ||
| SBS | Chr12 | 21505973 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g35370 |
| SBS | Chr12 | 930404 | C-T | HET | ||
| SBS | Chr2 | 23674826 | A-T | HET | ||
| SBS | Chr2 | 620128 | A-T | Homo | ||
| SBS | Chr3 | 17532000 | C-T | Homo | ||
| SBS | Chr3 | 8443780 | C-A | Homo | ||
| SBS | Chr4 | 16780429 | T-A | HET | ||
| SBS | Chr4 | 34055874 | A-C | HET | ||
| SBS | Chr4 | 3705920 | T-A | HET | ||
| SBS | Chr5 | 23346747 | C-T | HET | ||
| SBS | Chr6 | 16700478 | G-A | HET | ||
| SBS | Chr6 | 21888456 | T-C | HET | ||
| SBS | Chr7 | 14357763 | G-A | HET | ||
| SBS | Chr7 | 19796882 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g33150 |
| SBS | Chr7 | 20886200 | C-G | Homo | ||
| SBS | Chr9 | 13374910 | G-A | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 8462205 | 8462215 | 10 | |
| Deletion | Chr3 | 8618704 | 8618705 | 1 | LOC_Os03g15620 |
| Deletion | Chr10 | 9394001 | 9824000 | 429999 | 71 |
| Deletion | Chr3 | 13362876 | 13362877 | 1 | LOC_Os03g23110 |
| Deletion | Chr8 | 14099051 | 14099053 | 2 | |
| Deletion | Chr4 | 14858156 | 14858157 | 1 | LOC_Os04g25640 |
| Deletion | Chr7 | 21988544 | 21988552 | 8 | |
| Deletion | Chr9 | 22493141 | 22493142 | 1 | |
| Deletion | Chr1 | 28566748 | 28566752 | 4 | |
| Deletion | Chr2 | 35302001 | 35343000 | 40999 | 7 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 25435571 | 25435581 | 11 | |
| Insertion | Chr5 | 29945899 | 29945899 | 1 | |
| Insertion | Chr7 | 6431611 | 6431616 | 6 | LOC_Os07g11640 |
| Insertion | Chr9 | 13258549 | 13258549 | 1 |
Inversions: 5
Translocations: 47
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 731035 | Chr11 | 691011 | |
| Translocation | Chr7 | 2744857 | Chr4 | 35498044 | |
| Translocation | Chr11 | 3817164 | Chr1 | 2752689 | 2 |
| Translocation | Chr7 | 4765554 | Chr1 | 23994254 | |
| Translocation | Chr8 | 6896135 | Chr4 | 1405427 | 2 |
| Translocation | Chr3 | 8452093 | Chr2 | 3821621 | |
| Translocation | Chr10 | 9694950 | Chr3 | 16766814 | |
| Translocation | Chr6 | 10276126 | Chr4 | 4241547 | |
| Translocation | Chr8 | 10395237 | Chr1 | 31269133 | |
| Translocation | Chr8 | 10523768 | Chr7 | 8953433 | |
| Translocation | Chr11 | 10564549 | Chr2 | 9965844 | |
| Translocation | Chr6 | 10800797 | Chr4 | 16769108 | |
| Translocation | Chr7 | 11077829 | Chr4 | 29420504 | 2 |
| Translocation | Chr7 | 11777384 | Chr2 | 16654924 | |
| Translocation | Chr12 | 11832536 | Chr3 | 15245750 | 2 |
| Translocation | Chr11 | 13171258 | Chr4 | 936837 | LOC_Os11g22910 |
| Translocation | Chr12 | 13459403 | Chr11 | 23449715 | |
| Translocation | Chr5 | 14966394 | Chr2 | 28384013 | |
| Translocation | Chr10 | 15534733 | Chr7 | 7220316 | |
| Translocation | Chr4 | 15915435 | Chr3 | 32469434 | |
| Translocation | Chr11 | 15950035 | Chr1 | 14847997 | |
| Translocation | Chr11 | 16621520 | Chr1 | 35242609 | |
| Translocation | Chr4 | 16774089 | Chr1 | 31955400 | |
| Translocation | Chr10 | 16820917 | Chr1 | 41587105 | |
| Translocation | Chr8 | 17931637 | Chr1 | 2892449 | |
| Translocation | Chr8 | 17950441 | Chr7 | 6428545 | 2 |
| Translocation | Chr11 | 18671677 | Chr7 | 7595528 | 2 |
| Translocation | Chr11 | 18757657 | Chr6 | 3230861 | 2 |
| Translocation | Chr9 | 19310217 | Chr3 | 8413965 | 2 |
| Translocation | Chr8 | 19754201 | Chr1 | 24031476 | |
| Translocation | Chr11 | 20143671 | Chr4 | 14957141 | 2 |
| Translocation | Chr7 | 20170939 | Chr6 | 5157867 | |
| Translocation | Chr11 | 21579249 | Chr4 | 6579709 | |
| Translocation | Chr4 | 22547375 | Chr1 | 7916875 | |
| Translocation | Chr11 | 22922301 | Chr6 | 1553353 | |
| Translocation | Chr12 | 23183732 | Chr8 | 4642052 | 2 |
| Translocation | Chr8 | 24363344 | Chr2 | 1947527 | 2 |
| Translocation | Chr5 | 24375417 | Chr3 | 701207 | 2 |
| Translocation | Chr6 | 25107112 | Chr5 | 10239450 | |
| Translocation | Chr11 | 26982430 | Chr6 | 23272817 | |
| Translocation | Chr12 | 26994382 | Chr3 | 24335450 | 2 |
| Translocation | Chr12 | 27012200 | Chr2 | 8113868 | |
| Translocation | Chr7 | 27769892 | Chr1 | 29676879 | |
| Translocation | Chr11 | 27879279 | Chr6 | 9219395 | |
| Translocation | Chr8 | 28411989 | Chr7 | 8173485 | 2 |
| Translocation | Chr11 | 28680292 | Chr8 | 20028567 | |
| Translocation | Chr11 | 28765170 | Chr9 | 1675449 |