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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13013520	C-G	HET
SBS	Chr10	12823768	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g24910
SBS	Chr10	13471033	G-A	HET
SBS	Chr10	94869	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01100
SBS	Chr11	1127846	A-T	HET
SBS	Chr11	1626220	T-C	HET
SBS	Chr11	20195553	G-A	HET
SBS	Chr11	21334766	C-A	Homo
SBS	Chr12	18251797	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30410
SBS	Chr12	20982105	C-T	HET
SBS	Chr2	11277000	C-T	HET
SBS	Chr2	14716243	C-G	Homo
SBS	Chr2	4353505	G-A	Homo
SBS	Chr2	4540175	T-A	Homo
SBS	Chr4	13532525	A-C	Homo
SBS	Chr4	6603353	G-T	HET
SBS	Chr5	728583	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g02270
SBS	Chr5	8654875	C-T	HET
SBS	Chr6	7519485	A-C	HET
SBS	Chr7	29111957	T-A	HET
SBS	Chr7	4649205	G-T	HET
SBS	Chr7	975658	A-G	HET
SBS	Chr8	25836888	G-A	HET
SBS	Chr8	27919722	A-T	HET
SBS	Chr8	8049933	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	7415894	C-T	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	633001	642000	8999	3
Deletion	Chr3	3110517	3110520	3
Deletion	Chr8	5638985	5638993	8
Deletion	Chr4	6583001	6600000	16999	3
Deletion	Chr8	7142565	7142572	7
Deletion	Chr6	7639001	7863000	223999	31
Deletion	Chr6	7879001	7902000	22999	4
Deletion	Chr4	11301287	11301292	5
Deletion	Chr5	11809515	11809517	2	LOC_Os05g20170
Deletion	Chr10	12026661	12026668	7
Deletion	Chr8	14198665	14198669	4
Deletion	Chr10	17201357	17201363	6
Deletion	Chr6	17290100	17290103	3
Deletion	Chr6	17423157	17423159	2
Deletion	Chr6	24106892	24106897	5	LOC_Os06g40460
Deletion	Chr5	25271001	25372000	100999	17
Deletion	Chr5	25377001	25457000	79999	14
Deletion	Chr7	28969172	28969174	2
Deletion	Chr1	30459598	30459606	8
Deletion	Chr6	30465964	30465976	12
Deletion	Chr1	31718971	31718979	8	LOC_Os01g55120

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	31479258	31479259	2
Insertion	Chr11	15445916	15445917	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	21336215	21577990	LOC_Os11g36240
Inversion	Chr11	21336234	21585656	LOC_Os11g36240
Inversion	Chr11	21578004	22428696	2
Inversion	Chr11	21578762	22120447
Inversion	Chr11	21906503	22127646	LOC_Os11g37100
Inversion	Chr11	21906512	22120447	LOC_Os11g37100
Inversion	Chr5	25268172	25631740	2
Inversion	Chr5	25631747	25707016	LOC_Os05g44080

No Translocation

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