Search Results
| Mutant Information |
|---|
| Mutant Name | FN2345 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2345 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7322380 | T-A | Homo | ||
| SBS | Chr2 | 11127983 | T-A | HET | ||
| SBS | Chr3 | 9580638 | C-A | HET | ||
| SBS | Chr3 | 9580640 | T-C | HET | ||
| SBS | Chr3 | 16846711 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g29560 |
| SBS | Chr4 | 10692542 | G-A | Homo | ||
| SBS | Chr4 | 15520020 | C-A | HET | ||
| SBS | Chr4 | 18041479 | C-G | HET | ||
| SBS | Chr4 | 24280280 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g40910 |
| SBS | Chr4 | 35465914 | C-T | HET | ||
| SBS | Chr6 | 13120571 | C-T | HET | ||
| SBS | Chr6 | 19672475 | T-G | HET | ||
| SBS | Chr6 | 30584566 | A-T | HET | ||
| SBS | Chr7 | 2128487 | C-T | Homo | ||
| SBS | Chr7 | 10782250 | G-T | HET | ||
| SBS | Chr7 | 15419183 | T-G | HET | ||
| SBS | Chr7 | 20245987 | A-G | Homo | ||
| SBS | Chr8 | 23204470 | T-A | Homo | ||
| SBS | Chr8 | 27592818 | T-A | HET | ||
| SBS | Chr9 | 5351332 | T-C | Homo | ||
| SBS | Chr9 | 5616437 | A-G | Homo | ||
| SBS | Chr11 | 3102601 | G-C | Homo | ||
| SBS | Chr11 | 16894455 | A-G | Homo | ||
| SBS | Chr11 | 17542950 | C-A | Homo | STOP_GAINED | LOC_Os11g30170 |
| SBS | Chr11 | 23889653 | G-A | Homo | ||
| SBS | Chr12 | 2958530 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g06230 |
| SBS | Chr12 | 22455976 | A-G | HET |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2310555 | 2310564 | 9 | |
| Deletion | Chr2 | 3399332 | 3399334 | 2 | |
| Deletion | Chr3 | 4130001 | 4161000 | 30999 | 9 |
| Deletion | Chr1 | 7322751 | 7322760 | 9 | |
| Deletion | Chr11 | 8101770 | 8102021 | 251 | LOC_Os11g14430 |
| Deletion | Chr5 | 8251888 | 8251892 | 4 | |
| Deletion | Chr7 | 8437472 | 8437473 | 1 | |
| Deletion | Chr7 | 8720519 | 8720524 | 5 | |
| Deletion | Chr3 | 8808823 | 8808828 | 5 | LOC_Os03g15970 |
| Deletion | Chr2 | 11127995 | 11127997 | 2 | |
| Deletion | Chr3 | 11680001 | 11700000 | 19999 | 5 |
| Deletion | Chr3 | 12280298 | 12280309 | 11 | |
| Deletion | Chr7 | 16482064 | 16482068 | 4 | |
| Deletion | Chr12 | 17628259 | 17628285 | 26 | |
| Deletion | Chr11 | 17681036 | 17681042 | 6 | |
| Deletion | Chr11 | 17900283 | 17900286 | 3 | |
| Deletion | Chr6 | 21302077 | 21302093 | 16 | |
| Deletion | Chr10 | 21386268 | 21386276 | 8 | |
| Deletion | Chr7 | 21726818 | 21726825 | 7 | |
| Deletion | Chr6 | 23709947 | 23709959 | 12 | |
| Deletion | Chr1 | 23981515 | 23981516 | 1 | LOC_Os01g42294 |
| Deletion | Chr5 | 24476976 | 24476982 | 6 | LOC_Os05g41795 |
| Deletion | Chr1 | 28455152 | 28455164 | 12 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 26532041 | 26532041 | 1 | |
| Insertion | Chr4 | 16083752 | 16083755 | 4 | |
| Insertion | Chr7 | 21985710 | 21985711 | 2 |
Inversions: 5
No Translocation