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| Mutant Information |
|---|
| Mutant Name | FN2420 [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2420 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2758247 | G-A | Homo | ||
| SBS | Chr1 | 29822248 | G-A | HET | ||
| SBS | Chr11 | 17620255 | T-C | HET | ||
| SBS | Chr11 | 23866848 | G-C | HET | ||
| SBS | Chr12 | 10858633 | G-A | HET | ||
| SBS | Chr2 | 20526845 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34300 |
| SBS | Chr2 | 25273520 | A-G | HET | ||
| SBS | Chr2 | 33853945 | C-T | Homo | ||
| SBS | Chr3 | 30975361 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g54030 |
| SBS | Chr3 | 36315353 | C-T | Homo | ||
| SBS | Chr4 | 17544827 | C-T | Homo | ||
| SBS | Chr4 | 19226660 | T-G | Homo | ||
| SBS | Chr4 | 19226661 | T-A | Homo | ||
| SBS | Chr4 | 20626757 | G-T | Homo | ||
| SBS | Chr4 | 33216595 | A-G | HET | ||
| SBS | Chr5 | 26369328 | A-T | HET | ||
| SBS | Chr5 | 29886601 | T-A | Homo | ||
| SBS | Chr5 | 3665627 | C-T | HET | ||
| SBS | Chr5 | 9565292 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g16790 |
| SBS | Chr6 | 16977379 | C-T | Homo | ||
| SBS | Chr7 | 21252988 | G-A | Homo | ||
| SBS | Chr8 | 13273185 | A-G | HET | ||
| SBS | Chr8 | 6667830 | C-T | HET | ||
| SBS | Chr8 | 7269625 | A-T | HET |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1129054 | 1129060 | 6 | |
| Deletion | Chr8 | 5443739 | 5443740 | 1 | |
| Deletion | Chr7 | 9799304 | 9799309 | 5 | |
| Deletion | Chr8 | 13263322 | 13263333 | 11 | |
| Deletion | Chr5 | 13544180 | 13544181 | 1 | LOC_Os05g23620 |
| Deletion | Chr5 | 13884702 | 13884710 | 8 | |
| Deletion | Chr12 | 14574337 | 14574349 | 12 | |
| Deletion | Chr10 | 15524602 | 15524611 | 9 | LOC_Os10g29880 |
| Deletion | Chr7 | 20235589 | 20235592 | 3 | |
| Deletion | Chr7 | 20897551 | 20897552 | 1 | |
| Deletion | Chr7 | 21069164 | 21069167 | 3 | |
| Deletion | Chr7 | 21122997 | 21123006 | 9 | |
| Deletion | Chr4 | 21788458 | 21788461 | 3 | |
| Deletion | Chr7 | 21950305 | 21950318 | 13 | |
| Deletion | Chr11 | 23312702 | 23312710 | 8 | LOC_Os11g39160 |
| Deletion | Chr1 | 26765001 | 26778000 | 12999 | 3 |
| Deletion | Chr6 | 28327388 | 28327393 | 5 | |
| Deletion | Chr4 | 28606001 | 28625000 | 18999 | 3 |
| Deletion | Chr4 | 28636001 | 28666000 | 29999 | 5 |
| Deletion | Chr1 | 40107058 | 40107060 | 2 |
Insertions: 5
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 27425144 | 27823432 | 2 |
| Inversion | Chr6 | 27519464 | 27823433 | 2 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 12925687 | Chr6 | 18229392 | |
| Translocation | Chr7 | 15420079 | Chr2 | 33188672 | |
| Translocation | Chr11 | 17701376 | Chr8 | 24046280 | |
| Translocation | Chr9 | 18723076 | Chr5 | 13459610 | |
| Translocation | Chr6 | 27519730 | Chr5 | 3637631 | LOC_Os06g45500 |