Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13634847	T-C	Homo
SBS	Chr1	14918043	G-A	HET
SBS	Chr1	5474896	G-A	HET
SBS	Chr1	6989650	T-C	HET
SBS	Chr1	8210628	A-G	HET
SBS	Chr10	22611062	C-A	HET
SBS	Chr10	3816970	G-C	HET
SBS	Chr11	22828672	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g38530
SBS	Chr12	11519557	A-C	HET
SBS	Chr12	20982105	C-T	HET
SBS	Chr2	19871651	C-G	Homo
SBS	Chr2	2313894	C-T	HET
SBS	Chr2	26405622	T-A	HET
SBS	Chr2	30276733	T-C	HET
SBS	Chr2	7092403	G-T	HET
SBS	Chr3	28312308	A-G	Homo
SBS	Chr3	32684644	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g57300
SBS	Chr3	32684648	T-C	Homo	SPLICE_SITE_DONOR	LOC_Os03g57300
SBS	Chr3	36056148	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g63830
SBS	Chr4	11369687	A-G	Homo
SBS	Chr4	13532525	A-C	HET
SBS	Chr4	18926661	G-A	HET
SBS	Chr4	26893015	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g45440
SBS	Chr4	28828925	T-C	HET
SBS	Chr4	5968996	T-C	HET
SBS	Chr5	18009862	C-T	Homo
SBS	Chr5	21113061	T-C	Homo
SBS	Chr5	21113072	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g35520
SBS	Chr5	21113073	G-A	Homo
SBS	Chr5	21113076	G-A	Homo
SBS	Chr5	6405419	G-A	Homo
SBS	Chr6	4457664	C-T	HET
SBS	Chr7	14114317	A-G	HET
SBS	Chr7	224440	G-A	HET
SBS	Chr7	29285248	A-C	Homo
SBS	Chr8	19322589	G-A	HET
SBS	Chr8	19659144	G-A	HET
SBS	Chr8	19855094	T-C	HET
SBS	Chr8	22657743	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g35930
SBS	Chr8	27613375	C-T	HET
SBS	Chr8	8049933	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	11480705	A-T	Homo
SBS	Chr9	19733711	G-T	HET
SBS	Chr9	251041	G-T	HET
SBS	Chr9	5772515	G-T	HET
SBS	Chr9	9298334	T-C	Homo

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	979558	979569	11
Deletion	Chr1	1272665	1272667	2
Deletion	Chr4	1721380	1721385	5
Deletion	Chr6	2103006	2103008	2
Deletion	Chr3	7073258	7073267	9
Deletion	Chr1	7168114	7168119	5
Deletion	Chr2	9096001	9204000	107999	17
Deletion	Chr9	9144923	9144938	15
Deletion	Chr2	9207001	9224000	16999	4
Deletion	Chr6	12225709	12225713	4	LOC_Os06g21160
Deletion	Chr11	13089001	13112000	22999	3
Deletion	Chr1	16907493	16907495	2	LOC_Os01g30956
Deletion	Chr9	17273503	17273511	8
Deletion	Chr8	19854273	19854284	11
Deletion	Chr5	19918927	19918937	10	LOC_Os05g33800
Deletion	Chr11	22839470	22839476	6
Deletion	Chr3	23384884	23384886	2
Deletion	Chr5	25451684	25451706	22
Deletion	Chr5	25587557	25587565	8
Deletion	Chr8	28338729	28338733	4
Deletion	Chr1	28739177	28739178	1
Deletion	Chr7	28793574	28793581	7

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23047852	23047853	2
Insertion	Chr1	31479258	31479259	2
Insertion	Chr1	4011933	4011934	2
Insertion	Chr3	9570690	9570727	38
Insertion	Chr6	17865173	17865175	3
Insertion	Chr9	6144438	6144438	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	23923133	23999602	2
Inversion	Chr8	23930180	23999613	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2552453	Chr4	3647951
Translocation	Chr12	3714621	Chr8	23923133
Translocation	Chr12	3714623	Chr8	23930157	2
Translocation	Chr8	8711799	Chr3	8414050	2
Translocation	Chr12	10056755	Chr7	21185092	2
Translocation	Chr12	10056765	Chr7	21183849

Main menu