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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	524411	A-C	Homo
SBS	Chr1	41438042	A-G	Homo
SBS	Chr2	6579241	T-C	HET
SBS	Chr2	17442685	A-G	Homo
SBS	Chr2	30668929	A-T	HET
SBS	Chr3	6759847	A-T	Homo
SBS	Chr3	13689276	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g24110
SBS	Chr3	13859160	A-T	HET
SBS	Chr3	22361392	C-A	Homo
SBS	Chr3	28501288	G-A	HET
SBS	Chr3	32893619	G-C	Homo
SBS	Chr4	8701722	C-T	HET
SBS	Chr4	29932189	C-T	HET
SBS	Chr4	29960342	T-A	HET
SBS	Chr4	34361977	T-A	HET
SBS	Chr5	10199076	G-A	Homo
SBS	Chr5	21955172	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37500
SBS	Chr6	2610806	T-C	HET
SBS	Chr6	14274553	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g24380
SBS	Chr7	25836983	G-A	HET
SBS	Chr9	8089367	C-A	HET
SBS	Chr9	17863237	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g29404
SBS	Chr10	19391871	C-A	HET
SBS	Chr10	19391873	A-G	HET
SBS	Chr11	13499909	A-G	Homo
SBS	Chr11	16104955	G-A	Homo
SBS	Chr11	20914552	G-T	Homo
SBS	Chr12	13083824	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g23130
SBS	Chr12	14346858	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g24990
SBS	Chr12	14347640	C-G	Homo
SBS	Chr12	19866439	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g32870

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	2822811	2822812	1
Deletion	Chr3	3707272	3707273	1
Deletion	Chr2	5427001	5437000	9999	2
Deletion	Chr7	6828001	6900000	71999	9
Deletion	Chr9	8926244	8926245	1
Deletion	Chr4	11145276	11145279	3	LOC_Os04g19990
Deletion	Chr11	11217725	11217729	4
Deletion	Chr1	14354347	14354348	1
Deletion	Chr12	15706153	15706158	5
Deletion	Chr3	19055450	19055457	7
Deletion	Chr2	23394888	23394889	1
Deletion	Chr4	29847009	29847011	2

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	5872731	5872734	4
Insertion	Chr5	26651070	26651071	2
Insertion	Chr1	26495943	26495943	1
Insertion	Chr3	19759632	19759632	1
Insertion	Chr3	21046302	21046303	2
Insertion	Chr4	2365258	2365258	1
Insertion	Chr6	21857133	21857133	1
Insertion	Chr6	26111618	26111618	1	LOC_Os06g43450
Insertion	Chr7	686241	686241	1
Insertion	Chr11	22104942	22104946	5
Insertion	Chr12	15228442	15228455	14	LOC_Os12g26140

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	5325389	5427014	LOC_Os02g10160
Inversion	Chr2	5325414	5436734	2
Inversion	Chr5	29586810	29647152
Inversion	Chr5	29586818	29647160

Translocations: 22

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	1039344	Chr2	16716796
Translocation	Chr10	2694518	Chr6	22683226
Translocation	Chr11	3249472	Chr1	2526265	LOC_Os11g06670
Translocation	Chr12	4278162	Chr4	3934578
Translocation	Chr9	5191063	Chr6	8717720
Translocation	Chr9	7102726	Chr1	19889850
Translocation	Chr5	7847652	Chr3	23251985
Translocation	Chr10	9326837	Chr4	6362628	2
Translocation	Chr11	13710946	Chr2	13608070
Translocation	Chr8	14223161	Chr6	18930399	LOC_Os08g23490
Translocation	Chr12	14922591	Chr7	26455328
Translocation	Chr8	14932717	Chr5	20403560	2
Translocation	Chr6	16040202	Chr4	11855994
Translocation	Chr11	16683666	Chr3	25613097
Translocation	Chr9	18370188	Chr8	2960408
Translocation	Chr4	19009378	Chr2	17022569	2
Translocation	Chr12	19840888	Chr11	7073112	2
Translocation	Chr11	23032097	Chr2	17885925	2
Translocation	Chr4	25426406	Chr2	26281143	2
Translocation	Chr12	27080746	Chr6	8332724
Translocation	Chr11	27465552	Chr7	1879461	2
Translocation	Chr8	28403323	Chr7	4246452	2

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