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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13709425	A-T	HET	INTERGENIC
SBS	Chr1	16236597	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g29000
SBS	Chr1	24958491	G-C	HOMO	INTERGENIC
SBS	Chr1	29026017	A-G	HOMO	INTERGENIC
SBS	Chr1	39221662	T-G	HET	INTERGENIC
SBS	Chr1	39262332	G-A	HET	INTERGENIC
SBS	Chr1	8467909	G-A	HET	INTERGENIC
SBS	Chr10	2337941	A-T	HET	INTERGENIC
SBS	Chr10	4934277	C-A	HET	INTERGENIC
SBS	Chr10	6183740	C-G	HET	INTERGENIC
SBS	Chr10	7794856	G-A	HOMO	INTERGENIC
SBS	Chr11	24321010	C-A	HOMO	INTERGENIC
SBS	Chr11	7081471	A-G	HET	INTERGENIC
SBS	Chr12	18793399	C-T	HET	INTERGENIC
SBS	Chr2	5471417	C-T	HET	INTRON
SBS	Chr3	15822283	C-T	HOMO	INTERGENIC
SBS	Chr3	22034501	C-A	HOMO	INTERGENIC
SBS	Chr3	4168990	C-T	HET	INTERGENIC
SBS	Chr4	304714	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g01439
SBS	Chr5	14292249	G-C	HET	SYNONYMOUS_CODING
SBS	Chr5	15602732	G-T	HET	INTERGENIC
SBS	Chr5	15602733	T-G	HET	INTERGENIC
SBS	Chr5	15602735	G-T	HET	INTERGENIC
SBS	Chr5	20964280	T-C	HET	INTERGENIC
SBS	Chr5	20964281	A-G	HET	INTERGENIC
SBS	Chr5	26198853	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g45100
SBS	Chr5	29781798	C-T	HET	INTERGENIC
SBS	Chr6	13868968	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23730
SBS	Chr6	14017837	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	14929312	G-A	HET	INTERGENIC
SBS	Chr6	22103500	G-A	HET	INTERGENIC
SBS	Chr6	8570145	C-A	HET	INTERGENIC
SBS	Chr8	13298	G-T	HOMO	INTRON
SBS	Chr8	863209	T-A	HET	INTERGENIC
SBS	Chr8	9931226	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	201621	276983	75362	13
Deletion	Chr7	1574002	1574005	3
Deletion	Chr1	3942243	3942251	8	LOC_Os01g08150
Deletion	Chr1	5528656	5528672	16
Deletion	Chr3	5720334	5720339	5
Deletion	Chr10	5865882	5865889	7
Deletion	Chr10	7703710	7703715	5
Deletion	Chr1	10759902	10759922	20
Deletion	Chr5	11356667	11356679	12
Deletion	Chr5	11363885	11363888	3
Deletion	Chr5	13913215	13913222	7
Deletion	Chr9	15955234	15955236	2
Deletion	Chr10	16071135	16071139	4
Deletion	Chr11	17631096	17631123	27
Deletion	Chr2	19222109	19222114	5
Deletion	Chr4	20462730	20462739	9	LOC_Os04g33780
Deletion	Chr3	22960615	22960630	15
Deletion	Chr1	23389536	23389547	11
Deletion	Chr12	23554923	23554925	2
Deletion	Chr12	24857388	24857402	14	LOC_Os12g40160
Deletion	Chr11	27150495	27150497	2
Deletion	Chr6	27369158	27369162	4	LOC_Os06g45280
Deletion	Chr6	28410834	28410835	1
Deletion	Chr4	31813302	31813320	18

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	1141323	1141324	2
Insertion	Chr1	1981131	1981131	1
Insertion	Chr1	2743564	2743566	3
Insertion	Chr11	23208034	23208036	3
Insertion	Chr2	31769239	31769239	1
Insertion	Chr4	20031884	20031886	3
Insertion	Chr5	872423	872423	1
Insertion	Chr6	15361088	15361088	1
Insertion	Chr9	6695975	6695976	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6969230	7083645	LOC_Os11g12470
Inversion	Chr11	6978292	7083653
Inversion	Chr1	17136302	18206821	2
Inversion	Chr1	17137262	18206829	2
Inversion	Chr5	26282072	27040358	LOC_Os05g45280

No Translocation

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