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Mutant Information

Mutant Name	FN2465 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2465 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1340949	A-T	HET
SBS	Chr1	35718794	A-G	HET
SBS	Chr1	6952902	G-A	HET
SBS	Chr10	2119222	G-T	HET
SBS	Chr10	8387132	A-C	HET
SBS	Chr11	10113851	G-A	HET
SBS	Chr11	11764416	C-T	HET
SBS	Chr11	13319636	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23140
SBS	Chr11	1505745	G-A	HET
SBS	Chr11	22019121	G-A	Homo
SBS	Chr12	23124129	A-T	HET
SBS	Chr12	25573633	G-A	HET
SBS	Chr12	25991251	A-T	HET
SBS	Chr12	26598980	C-A	HET
SBS	Chr12	26598981	T-A	HET
SBS	Chr12	7622704	A-C	HET
SBS	Chr12	8680623	A-T	HET
SBS	Chr2	11871084	T-C	HET
SBS	Chr2	12165903	A-G	HET
SBS	Chr2	21773208	T-C	Homo
SBS	Chr2	26038643	G-A	Homo
SBS	Chr2	5516047	G-C	HET
SBS	Chr3	35265555	G-A	HET
SBS	Chr3	8545293	T-A	HET
SBS	Chr3	9239304	G-C	Homo
SBS	Chr4	22012700	C-T	HET
SBS	Chr4	2533600	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05104
SBS	Chr4	27353068	G-A	HET
SBS	Chr4	32430604	C-T	HET
SBS	Chr5	11716966	G-A	HET
SBS	Chr5	15868357	T-A	HET
SBS	Chr5	2015550	C-T	HET
SBS	Chr5	21890109	A-T	HET
SBS	Chr6	21506624	T-C	Homo
SBS	Chr6	5438749	A-G	HET
SBS	Chr7	3461265	G-T	HET
SBS	Chr7	7572215	G-A	HET
SBS	Chr8	1654944	G-A	HET

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1024455	1024456	1
Deletion	Chr3	2145975	2145977	2
Deletion	Chr4	2282304	2282309	5	LOC_Os04g04750
Deletion	Chr12	3379810	3379812	2	LOC_Os12g06920
Deletion	Chr9	3738515	3738517	2
Deletion	Chr6	5446235	5446256	21
Deletion	Chr8	5922686	5922689	3
Deletion	Chr10	6552927	6552932	5	LOC_Os10g11820
Deletion	Chr5	6610634	6610638	4
Deletion	Chr2	6679146	6679150	4
Deletion	Chr12	7520339	7520341	2
Deletion	Chr11	10545032	10545039	7
Deletion	Chr1	11554862	11554866	4
Deletion	Chr5	11721833	11721838	5
Deletion	Chr10	14558063	14558064	1
Deletion	Chr7	14628001	14649000	20999	LOC_Os07g25550
Deletion	Chr3	15168259	15168260	1
Deletion	Chr9	18683537	18683538	1
Deletion	Chr8	19512652	19512653	1
Deletion	Chr7	19742460	19742463	3	LOC_Os07g33050
Deletion	Chr2	20249660	20249662	2
Deletion	Chr4	24604889	24604906	17
Deletion	Chr8	27236842	27236843	1
Deletion	Chr5	28466611	28466630	19
Deletion	Chr3	33807213	33807217	4
Deletion	Chr1	33822483	33822484	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	19933858	19933859	2
Insertion	Chr11	18595240	18595240	1
Insertion	Chr7	22608285	22608287	3	LOC_Os07g37710

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	743821	Chr4	22308698	2
Translocation	Chr11	743824	Chr4	22571450	2
Translocation	Chr7	8261500	Chr3	18185028
Translocation	Chr12	9951551	Chr6	20870998
Translocation	Chr9	13461350	Chr2	15011068
Translocation	Chr6	28779911	Chr4	33481691
Translocation	Chr6	28779974	Chr4	33496192

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