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Mutant Information

Mutant Name	FN2469 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2469 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26418162	G-T	Homo
SBS	Chr1	28094336	T-A	HET
SBS	Chr1	29082263	G-T	Homo
SBS	Chr1	35809513	C-T	Homo
SBS	Chr10	5317332	C-A	HET
SBS	Chr10	5317333	A-T	HET
SBS	Chr10	8393342	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g16850
SBS	Chr10	9030578	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g17850
SBS	Chr2	8973800	C-T	HET
SBS	Chr3	17954274	G-T	HET
SBS	Chr3	22039312	T-C	HET
SBS	Chr3	22775644	C-T	HET
SBS	Chr3	23405536	A-G	HET
SBS	Chr4	14211324	A-T	HET
SBS	Chr4	23405101	C-T	HET
SBS	Chr6	10182052	G-A	HET
SBS	Chr6	17049863	G-A	Homo
SBS	Chr6	17364850	G-A	Homo
SBS	Chr6	24377401	G-A	Homo
SBS	Chr6	26429900	T-A	Homo
SBS	Chr7	15263996	C-A	HET
SBS	Chr7	18344572	T-C	HET
SBS	Chr7	7552264	G-T	HET
SBS	Chr7	8009601	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14030
SBS	Chr8	17915359	G-A	HET
SBS	Chr8	22055256	G-A	HET
SBS	Chr8	24168038	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g38160
SBS	Chr8	26485961	C-T	HET
SBS	Chr8	27746761	C-T	HET
SBS	Chr8	4539067	A-G	HET
SBS	Chr9	195776	A-T	HET
SBS	Chr9	2208603	T-C	Homo
SBS	Chr9	8915346	C-G	HET

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	5702015	5702017	2
Deletion	Chr7	7999001	8012000	12999	4
Deletion	Chr4	8811509	8811513	4
Deletion	Chr10	9511961	9511963	2
Deletion	Chr2	9983740	9983744	4
Deletion	Chr7	10033876	10033877	1
Deletion	Chr8	11305170	11305171	1
Deletion	Chr8	12350251	12350256	5
Deletion	Chr3	12553484	12553485	1
Deletion	Chr11	14675556	14675559	3
Deletion	Chr11	16104625	16104638	13
Deletion	Chr11	17970001	18000000	29999	5
Deletion	Chr11	18019437	18019441	4
Deletion	Chr3	22039101	22039112	11
Deletion	Chr2	23432929	23432930	1
Deletion	Chr4	26998643	26998645	2
Deletion	Chr1	32042006	32042008	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	9073538	9073579	42
Insertion	Chr2	2093475	2093477	3
Insertion	Chr8	13379252	13379252	1
Insertion	Chr9	16244987	16244988	2

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	27214486	Chr4	2638843	2

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