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Mutant Information

Mutant Name	FN2470 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2470 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17135019	C-T	HET
SBS	Chr1	17386229	G-A	Homo
SBS	Chr1	29919877	C-T	HET
SBS	Chr1	32249409	A-C	HET
SBS	Chr1	35128777	C-T	HET
SBS	Chr2	114594	G-A	HET
SBS	Chr2	3672975	T-A	HET
SBS	Chr2	10190736	G-A	HET
SBS	Chr2	22169933	T-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os02g36749
SBS	Chr3	2808149	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05620
SBS	Chr3	3791070	C-G	HET
SBS	Chr4	6276194	C-T	Homo
SBS	Chr4	7355679	T-A	Homo
SBS	Chr4	11163103	C-T	HET
SBS	Chr4	22662251	G-A	HET
SBS	Chr5	718216	T-G	HET
SBS	Chr5	13071491	A-G	HET
SBS	Chr6	9078607	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15970
SBS	Chr6	14974585	T-C	HET
SBS	Chr6	17620675	T-A	HET
SBS	Chr6	21547746	G-A	HET
SBS	Chr6	29838501	G-A	Homo	SPLICE_SITE_ACCEPTOR	LOC_Os06g49250
SBS	Chr7	3549738	C-T	HET
SBS	Chr7	15089196	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g26220
SBS	Chr7	17694340	G-A	HET
SBS	Chr8	9872683	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g16190
SBS	Chr8	17482672	G-C	HET
SBS	Chr8	18590535	T-C	HET
SBS	Chr8	26592707	A-T	HET
SBS	Chr10	6998721	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g12570
SBS	Chr10	9490988	A-G	Homo
SBS	Chr10	20429779	G-T	HET
SBS	Chr11	691878	T-A	HET
SBS	Chr11	6189791	G-A	HET
SBS	Chr11	9491906	G-A	HET
SBS	Chr11	22376992	C-G	HET
SBS	Chr12	3785333	T-G	Homo
SBS	Chr12	10671869	A-T	Homo
SBS	Chr12	13704296	C-A	Homo

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1134040	1134047	7	LOC_Os09g02630
Deletion	Chr4	2303757	2303759	2
Deletion	Chr1	2933539	2933542	3
Deletion	Chr11	5548782	5549201	419
Deletion	Chr12	9881641	9881642	1
Deletion	Chr4	11658346	11658367	21	LOC_Os04g20774
Deletion	Chr10	13150452	13150453	1
Deletion	Chr12	15970999	15971007	8	LOC_Os12g27220
Deletion	Chr12	16468535	16468544	9
Deletion	Chr2	22355132	22355143	11
Deletion	Chr8	24514939	24514945	6
Deletion	Chr2	25820462	25820475	13	LOC_Os02g42920
Deletion	Chr6	30279603	30279626	23
Deletion	Chr4	30545319	30545320	1	LOC_Os04g51560
Deletion	Chr1	35264883	35264897	14
Deletion	Chr1	38052584	38052586	2	LOC_Os01g65550

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7362967	7362968	2
Insertion	Chr2	22707659	22707660	2
Insertion	Chr5	26267735	26267735	1	LOC_Os05g45250
Insertion	Chr9	7692865	7692865	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3199192	3397966
Inversion	Chr5	3199196	3397927

No Translocation

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