Search Results

Mutant Information

Mutant Name	FN2471 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2471 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9537781	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16790
SBS	Chr1	21822282	A-G	HET
SBS	Chr1	42413270	C-T	Homo
SBS	Chr3	8929374	G-A	HET
SBS	Chr3	15718504	G-C	HET
SBS	Chr3	15718505	C-A	HET
SBS	Chr3	36378121	A-C	HET
SBS	Chr4	7007943	A-G	HET
SBS	Chr4	8067064	A-T	HET
SBS	Chr4	13116696	T-C	HET
SBS	Chr4	28856401	G-A	HET
SBS	Chr4	34218823	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g57520
SBS	Chr5	14890984	C-T	HET
SBS	Chr6	11046324	C-T	Homo
SBS	Chr6	11591121	T-C	HET
SBS	Chr6	21369629	A-T	Homo
SBS	Chr6	24027077	G-A	HET
SBS	Chr6	26641583	C-T	Homo
SBS	Chr6	29090862	C-T	Homo
SBS	Chr7	5605185	T-C	HET
SBS	Chr7	9303112	A-T	HET
SBS	Chr7	10418568	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17630
SBS	Chr7	15771144	C-T	HET
SBS	Chr7	16835790	T-A	HET
SBS	Chr7	16835791	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g28760
SBS	Chr7	22353100	G-A	HET
SBS	Chr7	26490711	A-T	HET
SBS	Chr8	1347053	G-A	HET
SBS	Chr8	7724047	G-C	HET
SBS	Chr8	10922349	A-T	Homo
SBS	Chr8	12090234	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20170
SBS	Chr8	21121917	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33770
SBS	Chr9	4988350	G-A	HET
SBS	Chr9	9838899	A-C	HET
SBS	Chr9	10915008	T-C	HET
SBS	Chr9	12865071	G-A	HET
SBS	Chr11	12692535	C-G	HET
SBS	Chr11	17872175	A-T	Homo
SBS	Chr11	24021053	G-A	HET
SBS	Chr12	8683917	A-G	HET
SBS	Chr12	11579860	C-A	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2148183	2148190	7	LOC_Os10g04520
Deletion	Chr5	4197943	4197948	5
Deletion	Chr3	4212264	4212266	2
Deletion	Chr5	5937467	5937475	8
Deletion	Chr8	7365858	7365865	7
Deletion	Chr2	8742859	8742861	2
Deletion	Chr4	12582019	12582022	3
Deletion	Chr11	16671608	16671609	1
Deletion	Chr6	17409980	17409983	3
Deletion	Chr3	19569234	19569235	1	LOC_Os03g35330
Deletion	Chr7	19759234	19759239	5
Deletion	Chr1	23257991	23257996	5	LOC_Os01g41070
Deletion	Chr1	24613169	24613175	6
Deletion	Chr11	26053687	26053688	1
Deletion	Chr12	27188176	27188184	8	LOC_Os12g43770
Deletion	Chr6	29553511	29553527	16
Deletion	Chr1	30233793	30233795	2
Deletion	Chr1	34305425	34305430	5	LOC_Os01g59340
Deletion	Chr1	34818619	34818630	11

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	28634162	28634165	4

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5212063	Chr1	19483686	2
Translocation	Chr10	10162738	Chr1	2405969	2
Translocation	Chr8	12809892	Chr7	28443144
Translocation	Chr8	12817329	Chr7	28443148
Translocation	Chr11	24137534	Chr9	6813157	LOC_Os11g40460

Main menu