Search Nipponbare

Mutant Information

Mutant Name	FN2472 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2472 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22035399	C-T	HET
SBS	Chr1	26043181	C-T	HET
SBS	Chr1	5520909	A-G	HET
SBS	Chr10	1143788	C-T	HET
SBS	Chr10	11536291	A-T	Homo
SBS	Chr10	1320219	C-T	HET
SBS	Chr10	16178587	C-T	HET
SBS	Chr11	23251859	T-A	Homo
SBS	Chr11	25729233	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g42710
SBS	Chr11	7636487	T-C	HET
SBS	Chr12	14527864	C-T	HET
SBS	Chr12	25074158	A-G	HET
SBS	Chr12	27286756	G-A	HET
SBS	Chr12	4280020	T-C	HET
SBS	Chr2	14315994	C-T	HET
SBS	Chr2	19640161	T-A	Homo
SBS	Chr3	17302775	A-G	HET
SBS	Chr3	17324708	A-C	HET
SBS	Chr3	32350643	T-C	Homo
SBS	Chr4	25657043	T-G	Homo
SBS	Chr4	5716966	A-G	Homo
SBS	Chr5	22145949	A-T	Homo
SBS	Chr5	8047640	T-C	Homo
SBS	Chr5	8047646	T-A	Homo
SBS	Chr6	1111677	T-G	Homo
SBS	Chr6	20546556	G-A	Homo
SBS	Chr6	29178210	T-C	HET
SBS	Chr6	30517507	C-T	HET
SBS	Chr7	15658427	A-T	HET
SBS	Chr7	25860678	G-A	HET
SBS	Chr7	29170377	C-T	HET
SBS	Chr8	7904815	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13300
SBS	Chr8	8642626	T-C	HET
SBS	Chr9	3738143	C-T	HET
SBS	Chr9	5499167	G-A	HET
SBS	Chr9	9567390	C-G	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1138869	1138873	4
Deletion	Chr5	7458401	7458412	11
Deletion	Chr8	8450164	8450165	1
Deletion	Chr12	8659265	8659268	3
Deletion	Chr11	13271305	13271311	6
Deletion	Chr1	13353363	13353373	10
Deletion	Chr5	15097659	15097663	4
Deletion	Chr2	18723121	18723122	1
Deletion	Chr5	18819646	18819657	11
Deletion	Chr11	24129474	24129476	2	LOC_Os11g40450
Deletion	Chr12	24430814	24430815	1	LOC_Os12g39590
Deletion	Chr3	25713918	25713923	5
Deletion	Chr2	27058884	27058923	39
Deletion	Chr3	27960014	27960017	3
Deletion	Chr5	28989315	28989317	2
Deletion	Chr3	31562298	31562304	6
Deletion	Chr3	33025779	33025780	1
Deletion	Chr1	33226001	33302000	75999	10
Deletion	Chr1	36316912	36316916	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19698000	19698001	2
Insertion	Chr10	9187948	9187951	4
Insertion	Chr4	3726413	3726413	1
Insertion	Chr7	20808442	20808447	6
Insertion	Chr8	27597840	27597841	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5383418	5857803	2
Inversion	Chr1	5383424	5857813	2
Inversion	Chr6	15960480	16205685	2
Inversion	Chr6	16036560	16497032	2
Inversion	Chr6	16207668	16207935

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	515252	Chr5	10473535	LOC_Os11g01960
Translocation	Chr12	4126723	Chr10	10547348
Translocation	Chr11	28683193	Chr7	1481182

Main menu