Search Results
Mutant Information |
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Mutant Name | FN2472 [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN2472 Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 36
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 5520909 | A-G | HET | ||
SBS | Chr1 | 22035399 | C-T | HET | ||
SBS | Chr1 | 26043181 | C-T | HET | ||
SBS | Chr2 | 14315994 | C-T | HET | ||
SBS | Chr2 | 19640161 | T-A | Homo | ||
SBS | Chr3 | 17302775 | A-G | HET | ||
SBS | Chr3 | 17324708 | A-C | HET | ||
SBS | Chr3 | 32350643 | T-C | Homo | ||
SBS | Chr4 | 5716966 | A-G | Homo | ||
SBS | Chr4 | 25657043 | T-G | Homo | ||
SBS | Chr5 | 8047640 | T-C | Homo | ||
SBS | Chr5 | 8047646 | T-A | Homo | ||
SBS | Chr5 | 22145949 | A-T | Homo | ||
SBS | Chr6 | 1111677 | T-G | Homo | ||
SBS | Chr6 | 20546556 | G-A | Homo | ||
SBS | Chr6 | 29178210 | T-C | HET | ||
SBS | Chr6 | 30517507 | C-T | HET | ||
SBS | Chr7 | 15658427 | A-T | HET | ||
SBS | Chr7 | 25860678 | G-A | HET | ||
SBS | Chr7 | 29170377 | C-T | HET | ||
SBS | Chr8 | 7904815 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g13300 |
SBS | Chr8 | 8642626 | T-C | HET | ||
SBS | Chr9 | 3738143 | C-T | HET | ||
SBS | Chr9 | 5499167 | G-A | HET | ||
SBS | Chr9 | 9567390 | C-G | HET | ||
SBS | Chr10 | 1143788 | C-T | HET | ||
SBS | Chr10 | 1320219 | C-T | HET | ||
SBS | Chr10 | 11536291 | A-T | Homo | ||
SBS | Chr10 | 16178587 | C-T | HET | ||
SBS | Chr11 | 7636487 | T-C | HET | ||
SBS | Chr11 | 23251859 | T-A | Homo | ||
SBS | Chr11 | 25729233 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g42710 |
SBS | Chr12 | 4280020 | T-C | HET | ||
SBS | Chr12 | 14527864 | C-T | HET | ||
SBS | Chr12 | 25074158 | A-G | HET | ||
SBS | Chr12 | 27286756 | G-A | HET |
Deletions: 19
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr6 | 1138869 | 1138873 | 4 | |
Deletion | Chr5 | 7458401 | 7458412 | 11 | |
Deletion | Chr8 | 8450164 | 8450165 | 1 | |
Deletion | Chr12 | 8659265 | 8659268 | 3 | |
Deletion | Chr11 | 13271305 | 13271311 | 6 | |
Deletion | Chr1 | 13353363 | 13353373 | 10 | |
Deletion | Chr5 | 15097659 | 15097663 | 4 | |
Deletion | Chr2 | 18723121 | 18723122 | 1 | |
Deletion | Chr5 | 18819646 | 18819657 | 11 | |
Deletion | Chr11 | 24129474 | 24129476 | 2 | LOC_Os11g40450 |
Deletion | Chr12 | 24430814 | 24430815 | 1 | LOC_Os12g39590 |
Deletion | Chr3 | 25713918 | 25713923 | 5 | |
Deletion | Chr2 | 27058884 | 27058923 | 39 | |
Deletion | Chr3 | 27960014 | 27960017 | 3 | |
Deletion | Chr5 | 28989315 | 28989317 | 2 | |
Deletion | Chr3 | 31562298 | 31562304 | 6 | |
Deletion | Chr3 | 33025779 | 33025780 | 1 | |
Deletion | Chr1 | 33226001 | 33302000 | 75999 | 10 |
Deletion | Chr1 | 36316912 | 36316916 | 4 |
Insertions: 5
Inversions: 5
Translocations: 3
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
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Translocation | Chr11 | 515252 | Chr5 | 10473535 | LOC_Os11g01960 |
Translocation | Chr12 | 4126723 | Chr10 | 10547348 | |
Translocation | Chr11 | 28683193 | Chr7 | 1481182 |