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Mutant Information

Mutant Name	FN2473 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2473 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26193267	T-A	Homo
SBS	Chr1	26193268	C-T	Homo
SBS	Chr1	28124056	G-A	Homo
SBS	Chr10	12206886	T-C	Homo
SBS	Chr10	14881841	T-C	Homo
SBS	Chr10	19327574	G-A	HET
SBS	Chr10	2276932	A-G	HET
SBS	Chr10	9878241	C-T	Homo
SBS	Chr11	17093579	G-A	Homo	STOP_GAINED	LOC_Os11g29450
SBS	Chr12	16252297	G-A	HET
SBS	Chr12	22366109	G-A	HET
SBS	Chr12	24243233	T-G	HET
SBS	Chr12	27207326	C-A	HET
SBS	Chr2	26656111	C-T	Homo
SBS	Chr2	28901133	C-T	Homo
SBS	Chr2	30277452	G-T	Homo
SBS	Chr2	3316709	T-A	Homo
SBS	Chr3	26092038	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g46134
SBS	Chr3	27054328	T-A	Homo
SBS	Chr3	5002851	C-G	Homo
SBS	Chr4	19950274	G-T	Homo
SBS	Chr4	19960065	A-C	HET
SBS	Chr4	25953808	A-G	HET
SBS	Chr4	4603793	C-T	Homo
SBS	Chr4	7762570	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g13900
SBS	Chr5	10249745	A-C	HET
SBS	Chr5	12214632	G-C	HET
SBS	Chr5	13299575	C-T	Homo
SBS	Chr5	14801849	T-A	Homo
SBS	Chr5	2207004	C-T	Homo
SBS	Chr6	11604858	A-G	HET
SBS	Chr7	20385423	T-C	Homo
SBS	Chr7	21768520	G-A	HET
SBS	Chr7	6894587	C-T	Homo
SBS	Chr7	938167	A-T	HET
SBS	Chr8	21058129	G-C	HET
SBS	Chr8	25915231	C-T	Homo
SBS	Chr9	849517	T-G	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2770229	2770239	10
Deletion	Chr1	3957140	3957144	4
Deletion	Chr4	5257064	5257074	10
Deletion	Chr2	5492168	5492192	24
Deletion	Chr6	5910846	5910860	14
Deletion	Chr12	7434924	7434929	5
Deletion	Chr3	9233266	9233270	4
Deletion	Chr8	9584943	9584948	5
Deletion	Chr4	10245535	10245557	22
Deletion	Chr3	13499433	13499508	75
Deletion	Chr2	17494991	17494996	5
Deletion	Chr5	18195948	18195955	7
Deletion	Chr10	18356884	18356887	3
Deletion	Chr5	21286688	21286690	2
Deletion	Chr7	21877161	21877162	1	LOC_Os07g36590
Deletion	Chr12	24352860	24352865	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27134019	27134020	2
Insertion	Chr4	10337162	10337162	1
Insertion	Chr8	7585547	7585547	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	19842542	20714059	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	5698974	Chr1	2830045	2
Translocation	Chr8	7300632	Chr6	22107489	2
Translocation	Chr12	8840168	Chr4	15519175
Translocation	Chr12	17770963	Chr6	26595423
Translocation	Chr7	24206846	Chr3	20211323	2
Translocation	Chr2	27025142	Chr1	8016906	2

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