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Mutant Information

Mutant Name	FN2476 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2476 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14745702	T-A	Homo
SBS	Chr1	14840700	A-T	Homo
SBS	Chr1	22666614	G-T	Homo
SBS	Chr1	28005399	A-G	HET
SBS	Chr1	29269921	G-A	HET
SBS	Chr1	31038427	C-T	HET
SBS	Chr1	36387224	T-G	HET
SBS	Chr1	42266980	G-T	HET
SBS	Chr10	12664660	G-A	Homo
SBS	Chr11	15045416	C-T	HET
SBS	Chr11	6256770	C-A	HET
SBS	Chr11	921704	G-A	HET
SBS	Chr11	9343471	G-A	HET
SBS	Chr12	4705001	C-T	Homo
SBS	Chr12	5273152	G-A	Homo
SBS	Chr12	5273153	T-A	Homo
SBS	Chr3	24096249	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43210
SBS	Chr3	4676979	T-C	HET
SBS	Chr4	30547141	A-G	HET
SBS	Chr5	12575864	C-T	HET
SBS	Chr5	14265611	G-A	HET
SBS	Chr5	4496151	G-A	HET
SBS	Chr6	27707126	G-T	HET
SBS	Chr6	27707127	A-T	HET
SBS	Chr6	885322	T-C	Homo
SBS	Chr7	15817855	G-A	HET
SBS	Chr8	11291786	C-T	HET
SBS	Chr8	20895247	C-T	HET
SBS	Chr8	2168582	G-T	HET
SBS	Chr8	2168585	T-A	HET
SBS	Chr9	10839288	G-A	HET
SBS	Chr9	4167554	C-T	Homo
SBS	Chr9	4415486	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08460

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Deletion	Chr10	1052646	1052647	1
Deletion	Chr12	1183324	1183328	4
Deletion	Chr10	1876105	1876106	1
Deletion	Chr4	6217213	6217214	1
Deletion	Chr5	6463073	6463086	13
Deletion	Chr4	7042335	7042338	3
Deletion	Chr10	13856872	13856873	1
Deletion	Chr10	16679613	16679628	15
Deletion	Chr4	22975663	22975683	20
Deletion	Chr1	25537534	25537542	8

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	23009733	23009733	1
Insertion	Chr2	26793248	26793265	18

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	4246345	Chr2	35077190
Translocation	Chr7	6594584	Chr4	18466064
Translocation	Chr12	9135217	Chr8	9992196	LOC_Os12g16030
Translocation	Chr11	19770413	Chr3	18226725
Translocation	Chr12	21962545	Chr1	11341442
Translocation	Chr12	27044602	Chr11	20669040

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