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Mutant Information

Mutant Name	FN2477 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2477 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26623929	T-G	HET
SBS	Chr1	35843641	C-T	HET
SBS	Chr1	37326908	T-C	HET
SBS	Chr10	11861501	C-A	HET
SBS	Chr10	12407415	C-T	Homo
SBS	Chr10	3014714	G-A	Homo
SBS	Chr10	7060773	C-G	HET
SBS	Chr11	19661570	C-G	HET
SBS	Chr11	23017890	T-G	HET
SBS	Chr11	26837501	T-C	HET
SBS	Chr11	27279845	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g45080
SBS	Chr11	2886537	C-T	HET
SBS	Chr12	10103671	C-A	HET
SBS	Chr12	1541662	C-T	HET
SBS	Chr12	17000924	G-T	HET
SBS	Chr12	20244983	G-A	HET
SBS	Chr12	6610514	C-T	HET
SBS	Chr2	10396762	A-C	HET
SBS	Chr2	10403395	C-A	HET
SBS	Chr2	1333481	T-A	Homo
SBS	Chr2	25359756	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g42160
SBS	Chr2	7270807	C-T	HET
SBS	Chr3	23033821	C-T	Homo
SBS	Chr3	34696873	G-A	HET
SBS	Chr3	4931462	G-A	Homo
SBS	Chr3	6138313	T-A	Homo
SBS	Chr3	7306957	G-T	Homo
SBS	Chr4	20851775	T-C	HET
SBS	Chr4	22348189	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37550
SBS	Chr4	22348191	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g37550
SBS	Chr4	31627700	C-A	Homo
SBS	Chr4	33047136	G-T	Homo
SBS	Chr4	9575987	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17500
SBS	Chr5	23366997	G-A	HET
SBS	Chr6	14372356	C-T	HET
SBS	Chr6	25724058	G-A	Homo
SBS	Chr6	27697596	G-A	Homo
SBS	Chr6	4134614	G-A	HET
SBS	Chr6	6658481	G-A	HET
SBS	Chr7	23012483	G-A	Homo
SBS	Chr7	25976380	G-C	HET
SBS	Chr8	23578833	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g37310
SBS	Chr8	9302987	C-T	Homo
SBS	Chr9	9743375	G-T	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1843424	1843436	12	LOC_Os05g04100
Deletion	Chr10	1874867	1874873	6	LOC_Os10g04060
Deletion	Chr2	4123472	4123476	4
Deletion	Chr3	4674438	4674439	1
Deletion	Chr2	5332174	5332183	9	LOC_Os02g10180
Deletion	Chr6	7813942	7813945	3
Deletion	Chr4	9557770	9557778	8
Deletion	Chr9	9941368	9941369	1
Deletion	Chr11	13931333	13931335	2
Deletion	Chr12	17907922	17907928	6
Deletion	Chr7	18266897	18266898	1
Deletion	Chr4	19517444	19517452	8
Deletion	Chr4	20967001	20987000	19999	2
Deletion	Chr12	21546165	21546168	3
Deletion	Chr2	22489134	22489135	1	LOC_Os02g37220
Deletion	Chr2	25920001	25978000	57999	9
Deletion	Chr5	28784384	28784392	8
Deletion	Chr3	33758570	33758577	7
Deletion	Chr3	34560950	34560958	8

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	22379587	22379588	2
Insertion	Chr1	30567687	30567688	2
Insertion	Chr11	20993894	20993895	2
Insertion	Chr2	4010778	4010783	6
Insertion	Chr9	5829390	5829390	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	4251145	4669838
Inversion	Chr12	4251151	4669841
Inversion	Chr5	18171743	18606149	LOC_Os05g31254
Inversion	Chr5	18171750	18606155	LOC_Os05g31254
Inversion	Chr4	20853895	20888982	2
Inversion	Chr4	20853897	20888993	2
Inversion	Chr1	28268318	28994682	LOC_Os01g49180
Inversion	Chr1	28276045	28994685

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	18963098	Chr1	27209441
Translocation	Chr2	25284977	Chr1	12528665

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