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Mutant Information

Mutant Name	FN2481 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2481 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2258358	C-A	Homo
SBS	Chr1	5736347	C-T	HET
SBS	Chr1	7991618	C-A	Homo
SBS	Chr1	15321358	T-C	Homo
SBS	Chr1	40132656	A-G	Homo
SBS	Chr2	12731435	C-T	Homo
SBS	Chr2	19058130	C-T	HET
SBS	Chr3	21371042	C-G	HET
SBS	Chr3	34481560	A-G	Homo
SBS	Chr4	731292	G-A	Homo
SBS	Chr4	1268686	C-A	HET
SBS	Chr4	10826052	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g19430
SBS	Chr4	16630420	T-C	Homo
SBS	Chr4	19008833	G-C	HET
SBS	Chr4	21076141	G-A	HET
SBS	Chr4	30255785	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g51090
SBS	Chr5	17944150	A-T	Homo
SBS	Chr8	3170651	G-T	HET
SBS	Chr9	7179932	A-T	HET
SBS	Chr9	8987605	G-A	Homo
SBS	Chr9	9510203	C-A	HET
SBS	Chr9	12676319	C-T	HET
SBS	Chr9	14120833	C-T	HET
SBS	Chr9	17071614	T-C	HET
SBS	Chr10	3253818	C-G	HET
SBS	Chr10	6841159	C-A	HET
SBS	Chr10	13496673	T-C	Homo
SBS	Chr10	23184663	C-G	Homo
SBS	Chr11	17158207	G-A	Homo	STOP_GAINED	LOC_Os11g29570

Deletions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	11399654	11399830	176	LOC_Os07g19250
Deletion	Chr1	16493953	16493954	1
Deletion	Chr9	19896865	19896872	7
Deletion	Chr9	20483484	20483485	1
Deletion	Chr4	30256001	30270000	13999	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	7726165	7726166	2
Insertion	Chr1	4839595	4839595	1
Insertion	Chr2	30175401	30175403	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7269064	7795125	LOC_Os06g13230
Inversion	Chr6	7269077	7795125	LOC_Os06g13230
Inversion	Chr1	31774263	32529470

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	633974	Chr5	25587826
Translocation	Chr11	1140251	Chr9	8504354	LOC_Os11g03160
Translocation	Chr11	1140266	Chr9	8501338	LOC_Os11g03160
Translocation	Chr8	8561243	Chr1	14847320	LOC_Os08g14290
Translocation	Chr6	21361859	Chr1	18784278
Translocation	Chr11	22094146	Chr8	7405061
Translocation	Chr8	22388823	Chr2	16788107	2

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