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Mutant Information

Mutant Name	FN2482 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2482 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13588565	T-C	HET
SBS	Chr1	30970721	T-A	HET
SBS	Chr1	6537798	C-T	HET
SBS	Chr10	21085865	C-T	HET
SBS	Chr10	7407006	G-A	HET
SBS	Chr11	13568653	C-T	Homo
SBS	Chr11	14295491	A-G	Homo
SBS	Chr11	20260267	T-C	Homo
SBS	Chr11	23626081	G-A	Homo
SBS	Chr11	24067733	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g40370
SBS	Chr11	24067734	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g40370
SBS	Chr12	12706471	C-T	HET
SBS	Chr2	17435694	T-A	HET
SBS	Chr3	14871570	C-T	HET
SBS	Chr3	30805439	G-A	Homo
SBS	Chr4	10584126	T-A	HET
SBS	Chr4	14630167	C-A	HET
SBS	Chr4	14781521	G-A	HET
SBS	Chr4	21765384	G-A	HET
SBS	Chr4	26409280	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g44630
SBS	Chr4	26691421	C-T	HET
SBS	Chr4	29613230	T-C	HET
SBS	Chr5	17829719	C-T	Homo
SBS	Chr5	22315847	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g38060
SBS	Chr5	3851553	C-T	HET
SBS	Chr6	26339403	T-A	HET
SBS	Chr6	26447215	T-A	HET
SBS	Chr6	28861123	G-A	HET
SBS	Chr6	8724237	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15360
SBS	Chr7	20205588	A-G	HET
SBS	Chr7	26826142	G-T	HET
SBS	Chr9	21882726	C-T	HET
SBS	Chr9	9884468	A-C	HET

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2245510	2245596	86
Deletion	Chr4	6699001	6710000	10999	3
Deletion	Chr5	10031875	10031877	2
Deletion	Chr5	10779980	10780003	23
Deletion	Chr7	16518870	16518872	2
Deletion	Chr1	42818176	42818180	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17722031	17722031	1
Insertion	Chr11	16230816	16230816	1
Insertion	Chr11	24199989	24199990	2
Insertion	Chr12	17537271	17537273	3
Insertion	Chr2	23462455	23462455	1

No Inversion

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1243	Chr2	162
Translocation	Chr10	5126693	Chr3	13468759	2
Translocation	Chr8	6074783	Chr5	8208424	2
Translocation	Chr5	9877324	Chr1	22531585	LOC_Os05g17260
Translocation	Chr3	10357770	Chr2	34582599	LOC_Os03g18454
Translocation	Chr12	16650779	Chr5	9483435	2
Translocation	Chr12	20175900	Chr11	13411844	LOC_Os12g33360
Translocation	Chr8	21861945	Chr6	10139916
Translocation	Chr7	25059111	Chr2	19086723
Translocation	Chr11	27700772	Chr3	36199797
Translocation	Chr5	29429185	Chr3	30996622	2
Translocation	Chr3	35621256	Chr1	17260705	2

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