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Mutant Information

Mutant Name	FN2484 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2484 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5272936	G-A	HET
SBS	Chr1	36559549	G-T	HET
SBS	Chr1	36559550	C-T	HET
SBS	Chr2	32568008	G-A	HET
SBS	Chr3	6118678	G-A	Homo
SBS	Chr3	15601254	C-T	HET
SBS	Chr4	28787571	G-A	HET
SBS	Chr4	29539802	T-C	HET
SBS	Chr5	12284569	C-G	HET
SBS	Chr5	14112797	C-T	HET
SBS	Chr6	102123	G-C	Homo
SBS	Chr6	9556268	G-T	HET
SBS	Chr6	20331330	A-C	HET
SBS	Chr6	25638913	C-A	HET
SBS	Chr7	6561696	C-T	HET
SBS	Chr7	14264919	T-A	HET
SBS	Chr7	16979471	A-G	HET
SBS	Chr8	4840863	G-A	HET
SBS	Chr8	6963562	T-A	HET
SBS	Chr8	7179391	C-T	HET
SBS	Chr8	15629338	C-T	HET
SBS	Chr8	16665167	A-G	HET
SBS	Chr8	24486462	C-A	HET
SBS	Chr8	24847663	T-C	HET
SBS	Chr8	24848905	A-T	HET
SBS	Chr9	2727500	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g05070
SBS	Chr9	9035848	G-A	Homo
SBS	Chr9	12381286	C-T	HET
SBS	Chr9	16873445	T-A	HET
SBS	Chr10	4435199	C-T	Homo
SBS	Chr10	18492539	A-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os10g34680
SBS	Chr10	19121727	C-G	Homo
SBS	Chr11	2698674	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g05820
SBS	Chr12	4752171	T-A	HET
SBS	Chr12	5136007	G-A	HET
SBS	Chr12	9906959	A-G	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1832001	1850000	17999	4
Deletion	Chr4	3248956	3248957	1
Deletion	Chr10	4005487	4005488	1
Deletion	Chr12	5126666	5126669	3
Deletion	Chr7	5237942	5237947	5
Deletion	Chr4	10910136	10910151	15
Deletion	Chr4	11265956	11265977	21
Deletion	Chr4	11843784	11843785	1
Deletion	Chr4	12100416	12100418	2
Deletion	Chr10	12916805	12916814	9
Deletion	Chr10	15590001	15908000	317999	49
Deletion	Chr11	17345396	17345408	12
Deletion	Chr12	17616139	17616219	80
Deletion	Chr12	22127768	22127774	6	LOC_Os12g36100
Deletion	Chr1	26464007	26464008	1
Deletion	Chr11	27033572	27033573	1	LOC_Os11g44700

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	16827447	16827447	1
Insertion	Chr3	9316533	9316534	2
Insertion	Chr9	11913518	11913518	1
Insertion	Chr1	5943189	5943206	18
Insertion	Chr1	36512291	36512292	2
Insertion	Chr10	10472225	10472225	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	16312171	16845360
Inversion	Chr5	16312197	16845371
Inversion	Chr8	24135593	24404612	2
Inversion	Chr8	24135616	24404622	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	4980913	Chr6	5332251	LOC_Os07g09450
Translocation	Chr8	9624426	Chr7	8806219	LOC_Os08g15830
Translocation	Chr7	13124830	Chr6	17429698	2
Translocation	Chr6	21366296	Chr5	18202441
Translocation	Chr7	24715545	Chr3	29022801	LOC_Os07g41240
Translocation	Chr7	24715574	Chr3	29021428	LOC_Os07g41240

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