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Mutant Information

Mutant Name	FN2486 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2486 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1842746	G-A	Homo
SBS	Chr1	8344476	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g14890
SBS	Chr1	13672164	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g24270
SBS	Chr1	15946422	G-C	HET
SBS	Chr1	20088391	G-A	HET
SBS	Chr1	22343987	G-A	HET
SBS	Chr1	32815978	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56820
SBS	Chr1	35333861	T-C	HET
SBS	Chr2	14637691	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25170
SBS	Chr2	28428873	T-C	HET
SBS	Chr2	34696903	C-A	HET
SBS	Chr3	10402328	T-G	HET
SBS	Chr3	10808742	T-C	HET
SBS	Chr3	14607967	T-A	HET
SBS	Chr3	14607968	T-A	HET
SBS	Chr3	22196267	C-A	HET
SBS	Chr3	24190959	C-T	HET
SBS	Chr3	30215260	T-C	Homo
SBS	Chr4	581779	G-A	HET
SBS	Chr4	15485673	G-A	Homo
SBS	Chr4	29034054	A-C	HET
SBS	Chr4	35337794	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g59440
SBS	Chr5	12122345	C-T	Homo
SBS	Chr6	4494078	C-T	HET
SBS	Chr6	6959951	C-T	Homo
SBS	Chr6	13795930	G-T	HET
SBS	Chr6	15149842	A-G	HET
SBS	Chr7	24641655	A-T	HET
SBS	Chr7	25482364	G-A	HET
SBS	Chr8	1006650	G-A	HET
SBS	Chr8	3565373	A-T	HET
SBS	Chr8	3565374	G-T	HET
SBS	Chr8	3604496	C-T	HET
SBS	Chr8	5172150	G-A	HET
SBS	Chr8	11776011	C-T	HET
SBS	Chr8	21031143	C-T	HET
SBS	Chr9	4076991	G-A	Homo
SBS	Chr9	5709653	G-C	Homo
SBS	Chr9	11248793	G-C	HET
SBS	Chr9	13603146	G-A	HET	START_LOST	LOC_Os09g22550
SBS	Chr11	778173	C-T	Homo
SBS	Chr12	14370051	C-G	HET
SBS	Chr12	15382601	C-T	HET
SBS	Chr12	17298552	G-T	HET

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1857583	1857585	2
Deletion	Chr4	1900556	1900586	30	LOC_Os04g04120
Deletion	Chr4	6554761	6554767	6
Deletion	Chr7	8388856	8388858	2
Deletion	Chr10	9161264	9161275	11
Deletion	Chr3	9701708	9701719	11
Deletion	Chr1	10142836	10142843	7
Deletion	Chr6	11633299	11633303	4
Deletion	Chr3	15229910	15229911	1
Deletion	Chr12	15368268	15368277	9
Deletion	Chr1	15606388	15606394	6
Deletion	Chr12	17902047	17902055	8	LOC_Os12g29950
Deletion	Chr12	18717267	18717269	2
Deletion	Chr7	19798001	19817000	18999	5
Deletion	Chr8	22490275	22490282	7
Deletion	Chr5	24519434	24519438	4	LOC_Os05g41870
Deletion	Chr11	25682032	25682033	1
Deletion	Chr7	27293039	27293040	1
Deletion	Chr4	27564001	27564002	1	LOC_Os04g46460

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	1636478	1636479	2
Insertion	Chr3	14316094	14316095	2
Insertion	Chr11	3770504	3770504	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	3582023	3817607
Inversion	Chr7	3582030	3817610
Inversion	Chr9	8752135	9220230	LOC_Os09g14730
Inversion	Chr9	10902625	11196439	2
Inversion	Chr3	21879412	21973411
Inversion	Chr3	21879418	21973444
Inversion	Chr4	32656027	33261080	2
Inversion	Chr4	32656062	33261089	2

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3358942	Chr9	8893625
Translocation	Chr12	3359044	Chr9	10887768	2
Translocation	Chr8	5979870	Chr3	35071692
Translocation	Chr9	9435973	Chr7	13551099
Translocation	Chr9	9436706	Chr7	13551131
Translocation	Chr10	11287228	Chr6	2461702	2
Translocation	Chr10	12860090	Chr2	16818187	LOC_Os10g24980
Translocation	Chr7	19798034	Chr6	20552920	LOC_Os07g33150
Translocation	Chr7	19816241	Chr5	6874271	2

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