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Mutant Information

Mutant Name	FN2493 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2493 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12499494	G-A	HET
SBS	Chr1	27541357	T-C	HET
SBS	Chr1	29022540	G-A	HET
SBS	Chr1	32292546	C-A	HET
SBS	Chr1	32411948	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g56270
SBS	Chr1	39190180	T-A	HET
SBS	Chr1	39190183	T-C	HET
SBS	Chr2	8067266	T-C	HET
SBS	Chr3	19981076	T-C	Homo
SBS	Chr4	8958488	G-A	HET
SBS	Chr4	26999511	T-A	HET
SBS	Chr4	30261887	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51090
SBS	Chr4	31957690	A-G	HET
SBS	Chr5	10688085	C-A	HET
SBS	Chr5	14557917	C-T	HET
SBS	Chr5	15330122	G-C	HET
SBS	Chr5	15495404	G-A	Homo
SBS	Chr7	9445342	G-T	Homo
SBS	Chr7	28841511	G-T	HET
SBS	Chr8	5143916	A-G	HET
SBS	Chr9	5664949	T-C	HET
SBS	Chr9	10113735	T-G	HET
SBS	Chr9	12004423	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g20040
SBS	Chr10	5218310	T-A	Homo
SBS	Chr10	6188506	G-A	Homo
SBS	Chr11	6978405	C-T	HET
SBS	Chr12	10886351	C-T	Homo

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1259504	1259923	419
Deletion	Chr3	1350384	1350388	4
Deletion	Chr4	3350476	3350499	23
Deletion	Chr8	4001662	4001676	14
Deletion	Chr12	7123001	7171000	47999	5
Deletion	Chr7	12229807	12229808	1
Deletion	Chr9	14119001	14286000	166999	25
Deletion	Chr10	16376539	16376541	2
Deletion	Chr6	19660768	19660770	2
Deletion	Chr6	26634454	26634469	15	LOC_Os06g44140
Deletion	Chr4	27980001	28102000	121999	22
Deletion	Chr3	31071001	31111000	39999	5

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	24900167	24900167	1
Insertion	Chr5	14040336	14040337	2
Insertion	Chr7	6574347	6574351	5	LOC_Os07g11870
Insertion	Chr9	14870073	14870076	4	LOC_Os09g24900
Insertion	Chr11	17266855	17266857	3
Insertion	Chr2	7638956	7639035	80
Insertion	Chr6	10672860	10672860	1
Insertion	Chr9	1383674	1383674	1	LOC_Os09g02950
Insertion	Chr10	12849436	12849437	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1988692	2056970	2
Inversion	Chr5	1988763	2056983	2
Inversion	Chr4	27860903	28106373	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	6900294	Chr5	2479642
Translocation	Chr3	24883342	Chr2	8851067	2

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