Search Results

Mutant Information

Mutant Name	FN2495 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2495 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11336519	A-G	Homo
SBS	Chr1	12924369	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g22990
SBS	Chr1	15221256	C-T	Homo
SBS	Chr1	24045119	A-C	HET
SBS	Chr2	10957520	G-A	HET
SBS	Chr2	20017161	C-T	HET
SBS	Chr2	20296951	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34000
SBS	Chr3	7621562	C-T	HET
SBS	Chr4	24632946	T-C	HET
SBS	Chr4	25089757	A-C	HET
SBS	Chr5	5102273	C-T	Homo
SBS	Chr5	6213763	C-T	Homo
SBS	Chr5	6333765	G-A	HET
SBS	Chr5	10481228	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g18230
SBS	Chr5	20709931	T-G	Homo
SBS	Chr6	3295892	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g06940
SBS	Chr6	9580578	C-G	HET
SBS	Chr6	9595357	T-C	Homo
SBS	Chr6	10795367	T-C	HET
SBS	Chr6	13921768	G-T	Homo
SBS	Chr8	2521487	T-G	Homo
SBS	Chr8	11129159	A-G	HET
SBS	Chr8	21591104	C-G	HET
SBS	Chr8	22457180	T-A	HET
SBS	Chr9	2737634	T-G	Homo
SBS	Chr10	11197466	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21810
SBS	Chr10	11492985	C-T	HET
SBS	Chr10	13040021	T-A	HET
SBS	Chr10	13040022	T-A	HET
SBS	Chr11	1940662	G-T	HET
SBS	Chr11	8805080	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g15540
SBS	Chr11	9645199	A-C	Homo
SBS	Chr11	12117564	G-A	HET
SBS	Chr11	16815447	T-C	Homo
SBS	Chr11	18893833	A-T	HET
SBS	Chr11	22985111	G-A	HET
SBS	Chr12	4630919	T-A	HET
SBS	Chr12	7555467	G-A	HET

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	753905	753907	2
Deletion	Chr4	2618845	2618850	5
Deletion	Chr2	2773826	2773830	4
Deletion	Chr11	8825157	8825161	4
Deletion	Chr1	11319402	11319403	1
Deletion	Chr9	14504962	14504967	5
Deletion	Chr12	17678558	17678559	1
Deletion	Chr11	20472001	20484000	11999	2
Deletion	Chr10	21053984	21053985	1
Deletion	Chr6	22062013	22062017	4
Deletion	Chr6	30228001	30304000	75999	11
Deletion	Chr3	30538269	30538274	5
Deletion	Chr3	31630138	31630147	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19681332	19681333	2
Insertion	Chr2	29923728	29923728	1
Insertion	Chr3	26494459	26494459	1
Insertion	Chr10	317850	317850	1	LOC_Os10g01490

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	9761989	9838152

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8349331	Chr1	10581587
Translocation	Chr9	10393858	Chr8	1218345
Translocation	Chr9	12688235	Chr1	14628333
Translocation	Chr6	13891536	Chr5	5933476
Translocation	Chr10	15534748	Chr1	23827310	2
Translocation	Chr11	20483719	Chr2	31483989	2
Translocation	Chr11	20484000	Chr2	31484005	2
Translocation	Chr7	24518267	Chr3	11232143	LOC_Os07g40986
Translocation	Chr6	24623925	Chr4	8916172
Translocation	Chr6	24623936	Chr4	8894859	2

Main menu