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Mutant Information

Mutant Name	FN2497 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2497 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10428567	C-T	HET
SBS	Chr1	10542842	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18690
SBS	Chr1	17195783	A-G	HET
SBS	Chr1	27881457	C-T	Homo
SBS	Chr1	33789611	C-A	HET
SBS	Chr1	6858869	C-T	HET
SBS	Chr11	20204851	C-T	HET	STOP_GAINED	LOC_Os11g34490
SBS	Chr11	20244226	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34590
SBS	Chr11	20244227	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34590
SBS	Chr11	20255609	A-T	HET
SBS	Chr12	11177593	G-A	HET
SBS	Chr12	22174204	G-A	HET
SBS	Chr2	22707079	G-A	Homo
SBS	Chr2	23233560	T-C	HET
SBS	Chr2	7893401	T-C	HET
SBS	Chr3	14073576	G-A	HET
SBS	Chr4	10566100	G-A	HET
SBS	Chr4	18340673	C-T	HET
SBS	Chr5	17699980	G-A	Homo
SBS	Chr5	18814224	T-G	Homo
SBS	Chr6	1597726	A-G	HET
SBS	Chr6	17302325	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g30040
SBS	Chr7	2275703	G-T	HET
SBS	Chr7	24569426	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g41070
SBS	Chr7	27095893	C-G	Homo
SBS	Chr7	27537680	G-A	Homo
SBS	Chr7	696552	T-G	HET
SBS	Chr8	12454462	C-T	HET
SBS	Chr8	4021169	A-G	HET
SBS	Chr8	4786679	T-G	HET
SBS	Chr9	21902296	G-C	Homo
SBS	Chr9	6446547	G-A	HET

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	2929726	2929734	8
Deletion	Chr9	12612967	12612968	1
Deletion	Chr2	15903581	15903587	6	LOC_Os02g27050
Deletion	Chr5	17821301	17821304	3
Deletion	Chr10	18067626	18067627	1
Deletion	Chr8	20360001	20537000	176999	22
Deletion	Chr8	20544001	20811000	266999	30
Deletion	Chr8	20968435	20968439	4
Deletion	Chr12	25396001	25435000	38999	5
Deletion	Chr6	27651363	27651368	5
Deletion	Chr1	39468044	39468046	2

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	5097313	5097313	1
Insertion	Chr12	12869292	12869292	1
Insertion	Chr12	15629924	15629924	1
Insertion	Chr2	17055209	17055220	12
Insertion	Chr2	32364281	32364281	1
Insertion	Chr2	9034220	9034255	36
Insertion	Chr3	36205284	36205286	3
Insertion	Chr5	29193993	29193994	2
Insertion	Chr8	17446884	17446884	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6887470	6892085
Inversion	Chr3	6891774	7185101	2
Inversion	Chr8	20225363	20914437	LOC_Os08g32660
Inversion	Chr8	20809347	20914487	LOC_Os08g33360

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7742394	Chr2	19414038	2
Translocation	Chr12	23567165	Chr8	26859292
Translocation	Chr4	28318614	Chr1	42528132	2
Translocation	Chr11	28892980	Chr1	27584577	LOC_Os11g47900

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