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Mutant Information

Mutant Name	FN2499 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2499 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10485928	G-A	Homo
SBS	Chr1	2282398	G-A	HET
SBS	Chr1	28614357	G-A	HET
SBS	Chr1	32272811	A-C	HET
SBS	Chr1	33084673	C-A	HET
SBS	Chr1	3900084	G-A	HET
SBS	Chr1	42795742	G-A	HET
SBS	Chr10	3605541	T-A	Homo
SBS	Chr10	3605542	C-A	Homo
SBS	Chr11	11401154	T-A	HET
SBS	Chr11	19528396	C-T	HET
SBS	Chr11	19580986	A-T	HET
SBS	Chr12	9774622	C-T	HET
SBS	Chr12	9774753	A-G	HET
SBS	Chr2	101419	A-T	HET
SBS	Chr2	27511754	G-T	HET
SBS	Chr3	14114454	C-G	Homo
SBS	Chr3	8663889	G-A	HET
SBS	Chr5	23662901	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g40280
SBS	Chr5	23917418	C-T	Homo
SBS	Chr5	27066347	T-C	Homo
SBS	Chr5	3505007	T-C	Homo
SBS	Chr6	11350818	C-T	Homo
SBS	Chr6	13134429	G-A	Homo
SBS	Chr6	24611537	G-A	Homo
SBS	Chr7	14247028	C-T	Homo
SBS	Chr7	25510630	G-C	HET
SBS	Chr7	26562374	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g44480
SBS	Chr8	12685779	G-A	Homo
SBS	Chr8	20483449	A-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os08g33020
SBS	Chr8	26651055	T-A	HET
SBS	Chr9	14716682	G-A	HET
SBS	Chr9	6192690	C-A	Homo
SBS	Chr9	8146149	T-A	HET
SBS	Chr9	8360275	C-G	HET
SBS	Chr9	91744	A-C	HET

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1379899	1379902	3	LOC_Os04g03240
Deletion	Chr8	7428926	7428929	3	LOC_Os08g12550
Deletion	Chr8	11435254	11435256	2
Deletion	Chr12	12152001	12180000	27999	4
Deletion	Chr5	13648799	13648801	2
Deletion	Chr10	13989209	13989210	1
Deletion	Chr9	15392038	15392044	6
Deletion	Chr9	17543001	17584000	40999	6
Deletion	Chr6	19500373	19500385	12
Deletion	Chr3	19810129	19810130	1
Deletion	Chr1	21608001	21622000	13999	2
Deletion	Chr12	26597975	26597976	1
Deletion	Chr5	27450470	27450473	3
Deletion	Chr3	27644804	27644808	4
Deletion	Chr3	30120566	30120567	1
Deletion	Chr4	30434703	30434712	9

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	17990186	17990187	2
Insertion	Chr7	12880350	12880353	4
Insertion	Chr7	20898552	20898552	1
Insertion	Chr8	22128873	22128873	1
Insertion	Chr8	26828128	26828129	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	14566539	15186776	LOC_Os06g24810
Inversion	Chr9	17546619	18271166
Inversion	Chr9	17582989	18271176
Inversion	Chr8	22223599	22810803	2
Inversion	Chr8	22223609	22810804	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	5462278	Chr2	683696	2
Translocation	Chr12	9054632	Chr2	33279527	2
Translocation	Chr12	12197760	Chr6	15186771	LOC_Os12g21700
Translocation	Chr12	13798739	Chr6	26048250	2

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