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Mutant Information

Mutant Name	FN2529-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2529-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31538233	T-C	Homo
SBS	Chr1	38793771	T-A	Homo
SBS	Chr10	22845149	G-A	HET
SBS	Chr10	780930	A-T	HET
SBS	Chr11	1042312	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02990
SBS	Chr11	13469621	A-C	HET
SBS	Chr11	18481903	C-T	Homo
SBS	Chr2	11136955	C-T	HET
SBS	Chr2	13806186	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g23850
SBS	Chr2	15186886	G-C	Homo
SBS	Chr2	1553779	T-A	HET
SBS	Chr2	1553780	T-A	HET
SBS	Chr2	20533451	G-A	Homo
SBS	Chr2	20533453	A-G	Homo
SBS	Chr2	21491825	T-C	HET
SBS	Chr3	1200139	T-A	HET
SBS	Chr3	16340091	C-T	HET
SBS	Chr3	30358728	A-G	HET
SBS	Chr3	30398839	A-C	Homo
SBS	Chr3	33268751	C-T	Homo
SBS	Chr3	7616814	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g14040
SBS	Chr4	16991194	A-T	HET
SBS	Chr4	23252405	G-A	Homo
SBS	Chr4	27719551	T-C	Homo
SBS	Chr4	30813586	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g51930
SBS	Chr4	5722265	G-A	HET
SBS	Chr5	10974093	C-T	HET
SBS	Chr5	25737179	G-A	HET
SBS	Chr6	14825525	C-A	Homo
SBS	Chr6	26176229	C-A	HET
SBS	Chr6	26514448	G-C	HET
SBS	Chr6	6695513	C-A	HET
SBS	Chr7	13712305	A-C	HET
SBS	Chr7	16729181	G-A	HET
SBS	Chr8	9661657	G-A	Homo
SBS	Chr9	1039918	C-A	HET
SBS	Chr9	11352151	G-A	HET
SBS	Chr9	13432807	T-C	HET

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	33200	33203	3	LOC_Os04g01040
Deletion	Chr7	1506983	1506985	2
Deletion	Chr8	2861746	2861770	24	LOC_Os08g05420
Deletion	Chr3	2926158	2926163	5	LOC_Os03g05830
Deletion	Chr8	13555120	13555126	6
Deletion	Chr1	18915877	18915879	2
Deletion	Chr12	22023205	22023207	2
Deletion	Chr8	27198408	27198410	2
Deletion	Chr5	28761207	28761208	1	LOC_Os05g50190
Deletion	Chr5	28787096	28787099	3
Deletion	Chr5	29426874	29426881	7
Deletion	Chr1	30678355	30678433	78
Deletion	Chr4	30751417	30751418	1	LOC_Os04g51860
Deletion	Chr3	31567286	31567287	1	LOC_Os03g55490
Deletion	Chr4	33787765	33787766	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15346254	15346329	76
Insertion	Chr10	12528896	12528896	1
Insertion	Chr4	35261571	35261571	1
Insertion	Chr5	14520416	14520417	2
Insertion	Chr6	1276190	1276195	6	LOC_Os06g03340
Insertion	Chr6	22345768	22345768	1	LOC_Os06g37730
Insertion	Chr7	401151	401151	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7550910	8172480	LOC_Os04g13530
Inversion	Chr8	12906081	13448189	2
Inversion	Chr5	20019469	20035363
Inversion	Chr5	20019483	20035370

Translocations: 12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	336937	Chr10	782514	2
Translocation	Chr11	336943	Chr10	914895	2
Translocation	Chr8	4306960	Chr6	25086676
Translocation	Chr11	5197570	Chr3	105984
Translocation	Chr8	8178750	Chr3	28268378
Translocation	Chr11	11831706	Chr7	14037452	2
Translocation	Chr4	15518915	Chr2	22225603
Translocation	Chr11	19931472	Chr4	16892855
Translocation	Chr11	25804384	Chr7	4438689	LOC_Os11g42840
Translocation	Chr11	25899852	Chr10	10539183
Translocation	Chr11	27820948	Chr5	23587093	2
Translocation	Chr2	27928734	Chr1	8937077

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