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Mutant Information

Mutant Name	FN2537-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2537-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15140998	G-A	HET
SBS	Chr1	17051369	C-A	Homo
SBS	Chr1	18273970	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g33190
SBS	Chr1	28903348	A-T	HET
SBS	Chr10	2734711	G-C	HET
SBS	Chr10	7638371	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14040
SBS	Chr10	7800580	C-T	HET
SBS	Chr10	7800584	C-T	HET
SBS	Chr11	2390374	G-A	HET
SBS	Chr11	292861	A-C	HET
SBS	Chr12	11854064	T-A	Homo
SBS	Chr12	14771771	T-A	Homo
SBS	Chr2	19475055	C-T	HET
SBS	Chr2	27298600	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g45040
SBS	Chr2	29220120	T-C	HET
SBS	Chr2	2989009	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05990
SBS	Chr2	7786712	G-A	Homo
SBS	Chr3	30351838	T-A	HET
SBS	Chr3	30718872	C-T	HET
SBS	Chr3	5011799	C-T	Homo
SBS	Chr4	14445601	G-T	Homo
SBS	Chr4	18743989	T-A	Homo
SBS	Chr4	35215590	G-A	HET
SBS	Chr4	7993428	G-A	HET
SBS	Chr5	12848238	G-A	HET
SBS	Chr5	1378859	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g03360
SBS	Chr5	6478416	G-T	HET
SBS	Chr6	11963254	G-C	HET
SBS	Chr6	21711130	G-A	HET
SBS	Chr6	7891970	A-G	HET
SBS	Chr6	8857031	G-A	HET
SBS	Chr6	9692444	C-T	HET
SBS	Chr7	10008092	A-T	HET
SBS	Chr7	10552363	T-A	Homo
SBS	Chr7	10694165	C-A	Homo
SBS	Chr7	20394152	G-A	HET
SBS	Chr7	27580146	A-T	HET
SBS	Chr7	27580150	T-G	HET
SBS	Chr7	3951846	A-C	Homo
SBS	Chr8	11065142	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18060
SBS	Chr8	14513496	C-T	HET
SBS	Chr8	27645332	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g43760
SBS	Chr8	7655897	C-T	HET
SBS	Chr9	12272587	T-G	HET
SBS	Chr9	15002414	G-T	Homo

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1551630	1551636	6
Deletion	Chr12	2120729	2120735	6
Deletion	Chr11	2633638	2633645	7
Deletion	Chr10	7255521	7255525	4
Deletion	Chr12	8978051	8978053	2
Deletion	Chr5	9149537	9149546	9
Deletion	Chr11	13631614	13631623	9
Deletion	Chr2	15063697	15063698	1
Deletion	Chr3	17716922	17716924	2
Deletion	Chr8	18146954	18146955	1
Deletion	Chr12	21273451	21273459	8	LOC_Os12g34950
Deletion	Chr5	21651001	21661000	9999	2
Deletion	Chr5	21666001	21822000	155999	21
Deletion	Chr5	21828001	22167000	338999	53
Deletion	Chr6	23223845	23223848	3
Deletion	Chr2	25555096	25555226	130
Deletion	Chr7	28366635	28366642	7	LOC_Os07g47440
Deletion	Chr1	35915698	35915706	8

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	16137945	16137945	1
Insertion	Chr7	13576897	13576897	1	LOC_Os07g23980
Insertion	Chr8	11049434	11049434	1
Insertion	Chr9	12615143	12615143	1
Insertion	Chr9	2791278	2791278	1
Insertion	Chr9	3199189	3199195	7

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17284194	17284409	LOC_Os11g29780
Inversion	Chr2	30175588	30259840	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	13446782	Chr1	30260921	2
Translocation	Chr10	13449173	Chr1	30260916	2
Translocation	Chr5	17627891	Chr1	42980730
Translocation	Chr11	18033977	Chr1	31269142
Translocation	Chr7	19416460	Chr1	34821287
Translocation	Chr3	30824148	Chr2	30175597

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