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Mutant Information

Mutant Name	FN2538-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2538-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2007871	C-T	HET
SBS	Chr1	17913078	A-T	HET
SBS	Chr1	19444093	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35140
SBS	Chr2	8471348	C-T	Homo
SBS	Chr3	7816539	T-G	HET
SBS	Chr3	14555695	A-G	HET
SBS	Chr3	16670910	G-A	HET
SBS	Chr3	21141855	G-A	HET
SBS	Chr4	759914	G-A	HET
SBS	Chr4	5436080	G-T	HET
SBS	Chr4	10802491	G-A	Homo
SBS	Chr4	34276714	T-A	HET
SBS	Chr5	8119905	C-G	HET
SBS	Chr5	12626927	G-A	HET
SBS	Chr5	21655560	A-T	HET
SBS	Chr6	14543995	A-T	HET
SBS	Chr6	20546556	G-A	Homo
SBS	Chr6	21178176	T-C	HET
SBS	Chr7	8429131	G-T	HET
SBS	Chr7	9149402	G-A	HET
SBS	Chr7	15023687	A-G	HET
SBS	Chr8	1876964	C-A	HET
SBS	Chr8	7553779	T-C	Homo
SBS	Chr8	11117881	G-T	HET
SBS	Chr8	17797944	G-A	HET
SBS	Chr8	21439001	C-T	HET
SBS	Chr8	21439002	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g34200
SBS	Chr8	26737977	A-G	HET
SBS	Chr10	20143844	A-G	HET
SBS	Chr10	21101074	C-A	HET
SBS	Chr11	11933705	C-A	Homo
SBS	Chr11	20514399	G-A	HET
SBS	Chr11	20699516	A-T	HET
SBS	Chr11	24217044	A-T	HET
SBS	Chr11	26475251	T-C	HET
SBS	Chr12	14357279	T-A	HET
SBS	Chr12	19057221	C-T	Homo
SBS	Chr12	21494824	C-T	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1835945	1835946	1
Deletion	Chr11	1987583	1987585	2
Deletion	Chr10	4258912	4258924	12
Deletion	Chr6	4602388	4602389	1
Deletion	Chr3	6828885	6828888	3
Deletion	Chr4	7253731	7253742	11
Deletion	Chr4	7734476	7734499	23
Deletion	Chr8	8623863	8623864	1	LOC_Os08g14370
Deletion	Chr4	10963489	10963490	1
Deletion	Chr7	21528934	21528947	13
Deletion	Chr8	22145794	22145808	14
Deletion	Chr3	24768588	24768598	10
Deletion	Chr1	34808941	34808948	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	17891197	17891198	2
Insertion	Chr11	20143255	20143256	2
Insertion	Chr4	14041242	14041242	1
Insertion	Chr8	10502909	10502916	8
Insertion	Chr12	17878258	17878258	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8887422	9427461
Inversion	Chr11	18798597	19196675	LOC_Os11g31970
Inversion	Chr8	23077263	23276074	2
Inversion	Chr8	23077271	23276081	2
Inversion	Chr11	24975107	25256448
Inversion	Chr11	24977923	25256457	LOC_Os11g41620

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4622658	Chr5	8992412	2
Translocation	Chr3	9073231	Chr1	31953464	LOC_Os03g16440
Translocation	Chr3	9074524	Chr1	31953463	LOC_Os03g16450
Translocation	Chr6	17564715	Chr2	29747810
Translocation	Chr6	17564718	Chr2	29732264
Translocation	Chr11	22545861	Chr2	19802224
Translocation	Chr11	22804361	Chr9	8887418

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