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Mutant Information

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1681452	G-A	HET
SBS	Chr1	24031559	C-T	HET
SBS	Chr1	29509201	G-T	HET
SBS	Chr1	36232799	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g62584
SBS	Chr1	54708	A-G	Homo
SBS	Chr10	12090595	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g23180
SBS	Chr10	14606848	C-T	HET
SBS	Chr10	18925179	T-C
SBS	Chr10	425455	G-A	HET
SBS	Chr10	8635061	C-T	HET
SBS	Chr11	11499732	G-T	Homo
SBS	Chr12	1739458	T-A	HET
SBS	Chr12	17540369	G-T	Homo
SBS	Chr2	12388963	C-T	Homo	STOP_GAINED	LOC_Os02g20950
SBS	Chr2	23567659	C-G	HET
SBS	Chr2	27862598	G-A	Homo
SBS	Chr2	4591125	G-C	HET
SBS	Chr3	17095149	G-A	Homo
SBS	Chr3	17814406	C-T	HET
SBS	Chr3	20201233	C-T	Homo
SBS	Chr3	33516840	T-G	Homo
SBS	Chr3	35325991	C-T	HET
SBS	Chr4	26835833	G-A	HET
SBS	Chr4	29932146	C-T	HET
SBS	Chr4	30151336	G-A	HET
SBS	Chr4	32486615	G-T	HET
SBS	Chr5	10099712	G-C	Homo
SBS	Chr5	10164883	C-G	HET
SBS	Chr5	12223985	T-C	Homo
SBS	Chr5	12361104	C-T	Homo
SBS	Chr5	16803833	G-A	HET
SBS	Chr5	25440489	T-C	HET
SBS	Chr5	25970885	G-A	HET
SBS	Chr5	808695	C-A	HET
SBS	Chr6	11430786	G-C	HET
SBS	Chr6	15597848	G-A	HET
SBS	Chr6	2121699	C-A	HET
SBS	Chr6	25431684	C-A	Homo
SBS	Chr7	10705333	C-T	Homo
SBS	Chr7	22021662	G-A	Homo
SBS	Chr8	16031222	C-A	HET
SBS	Chr8	26234518	T-C	HET
SBS	Chr8	6502071	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g11050
SBS	Chr9	11468267	G-A	HET
SBS	Chr9	4155116	C-T	Homo
SBS	Chr9	4951254	C-T	Homo	STOP_GAINED	LOC_Os09g09240
SBS	Chr9	9146736	G-A	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	246748	246753	5	LOC_Os04g01320
Deletion	Chr12	395411	395427	16
Deletion	Chr4	696565	696571	6
Deletion	Chr4	696576	696582	6
Deletion	Chr12	854950	854964	14	LOC_Os12g02500
Deletion	Chr12	1999280	1999282	2
Deletion	Chr6	2108424	2108426	2	LOC_Os06g04830
Deletion	Chr3	5725001	5850000	124999	25
Deletion	Chr5	6194813	6194814	1
Deletion	Chr3	8554637	8554647	10
Deletion	Chr11	9497409	9497416	7
Deletion	Chr6	9662571	9662572	1
Deletion	Chr10	10699298	10699305	7
Deletion	Chr3	11818621	11818625	4
Deletion	Chr2	12006070	12006071	1
Deletion	Chr4	12410403	12410414	11
Deletion	Chr6	17904098	17904100	2
Deletion	Chr11	19980093	19980095	2
Deletion	Chr5	21212001	21212011	10	LOC_Os05g35730
Deletion	Chr6	22304041	22304047	6
Deletion	Chr1	22651497	22651499	2
Deletion	Chr8	25555503	25555506	3
Deletion	Chr2	34424001	34560000	135999	19

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	16443136	16443137	2
Insertion	Chr9	18654061	18654061	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	775376	775508
Inversion	Chr6	4409673	4409858
Inversion	Chr6	12151929	12152166	2
Inversion	Chr2	24079212	24079315
Inversion	Chr3	28406437	28443044
Inversion	Chr1	41706941	41707128

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	15605485	Chr1	17178524
Translocation	Chr11	18526081	Chr6	9190430	LOC_Os11g31680
Translocation	Chr11	18614296	Chr3	28406521
Translocation	Chr11	18653972	Chr3	28443048	LOC_Os11g31780

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