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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	39443010	G-A	HET
SBS	Chr1	9324593	C-T	HET
SBS	Chr10	5143103	T-A	Homo	STOP_GAINED	LOC_Os10g09529
SBS	Chr10	5149587	A-T	HET
SBS	Chr10	85879	G-A	HET
SBS	Chr12	1145803	G-A	HET
SBS	Chr12	12131972	G-A	HET
SBS	Chr12	14401641	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g25070
SBS	Chr12	23144794	C-T	HET
SBS	Chr12	6559971	G-T	HET
SBS	Chr2	23027097	C-T	HET
SBS	Chr2	25552296	G-A	HET
SBS	Chr2	30164044	T-C	Homo
SBS	Chr2	31335712	G-A	Homo
SBS	Chr3	14896175	C-A	HET
SBS	Chr3	3601762	G-A	HET
SBS	Chr3	7255505	C-T	HET
SBS	Chr4	159875	T-A	HET
SBS	Chr4	27390875	A-G	Homo
SBS	Chr4	28377393	A-G	Homo
SBS	Chr4	33024753	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55510
SBS	Chr5	6107421	G-A	HET
SBS	Chr5	8852960	G-A	HET
SBS	Chr6	15739662	T-G	HET
SBS	Chr6	25270704	G-A	HET
SBS	Chr7	12289135	C-T	HET
SBS	Chr7	17962161	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30350
SBS	Chr7	8083958	C-T	HET
SBS	Chr8	15537464	C-A	HET
SBS	Chr8	17040704	G-A	HET
SBS	Chr8	18974201	G-C	HET
SBS	Chr8	25612009	C-G	HET
SBS	Chr8	9785003	T-C	Homo
SBS	Chr8	9903127	A-G	Homo
SBS	Chr9	13887073	G-T	HET
SBS	Chr9	15378875	T-A	Homo
SBS	Chr9	22885242	A-T	HET
SBS	Chr9	7072368	C-T	HET

Deletions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3890793	3890794	1	LOC_Os02g07520
Deletion	Chr5	21989314	21989315	1	LOC_Os05g37580

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16886262	16886263	2
Insertion	Chr2	3898317	3898317	1
Insertion	Chr4	16149806	16149807	2
Insertion	Chr4	8954481	8954481	1
Insertion	Chr6	29215735	29215735	1
Insertion	Chr7	11460076	11460076	1
Insertion	Chr8	12465023	12465024	2
Insertion	Chr8	17372438	17372439	2
Insertion	Chr8	25824153	25824154	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10589330	10659785	2
Inversion	Chr6	13311654	13312016
Inversion	Chr8	14534925	14548971
Inversion	Chr3	25018614	25263575
Inversion	Chr7	26565498	26565605
Inversion	Chr8	26852368	26852573	LOC_Os08g42480
Inversion	Chr4	29321123	29321390

Translocations: 30

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	229821	Chr11	202782	2
Translocation	Chr11	355183	Chr7	302573	LOC_Os11g01600
Translocation	Chr6	3279737	Chr3	22139500
Translocation	Chr6	3279739	Chr3	22138540
Translocation	Chr11	3906881	Chr6	1550339	2
Translocation	Chr11	4160652	Chr8	8454867	LOC_Os11g08000
Translocation	Chr11	4210906	Chr4	21281125	2
Translocation	Chr8	8292520	Chr1	20886576	2
Translocation	Chr8	8561243	Chr1	14847320	LOC_Os08g14290
Translocation	Chr10	10336568	Chr3	7904909
Translocation	Chr10	10502959	Chr9	7055091
Translocation	Chr8	11861399	Chr4	3218469	LOC_Os08g19820
Translocation	Chr10	12158976	Chr4	4725772	LOC_Os10g23290
Translocation	Chr11	13696375	Chr8	10037279	2
Translocation	Chr11	15950035	Chr1	14847997
Translocation	Chr10	16249798	Chr4	5754072
Translocation	Chr2	16736332	Chr1	1389900	2
Translocation	Chr6	17781278	Chr2	15315086
Translocation	Chr4	17955491	Chr1	41377669
Translocation	Chr10	18201270	Chr3	14549804
Translocation	Chr12	18622797	Chr4	505947	2
Translocation	Chr9	19944904	Chr1	5636364	LOC_Os09g33780
Translocation	Chr7	21959958	Chr1	4558310
Translocation	Chr7	22081776	Chr3	1364441	2
Translocation	Chr6	23437421	Chr4	33991189
Translocation	Chr11	24902064	Chr9	10513769	LOC_Os11g41520
Translocation	Chr11	25330902	Chr1	18683345
Translocation	Chr8	26997820	Chr5	23804823
Translocation	Chr2	27133113	Chr1	25821321
Translocation	Chr11	28718653	Chr8	25742856	2

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