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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16719702	T-A	HET
SBS	Chr1	26954868	G-A	HET
SBS	Chr1	32801800	A-T	HET
SBS	Chr1	4296957	C-A	HET
SBS	Chr10	19519145	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g36490
SBS	Chr10	21218280	C-T	Homo
SBS	Chr11	16848069	G-A	HET
SBS	Chr11	17696882	T-C	Homo
SBS	Chr11	23075748	T-A	HET
SBS	Chr12	15943162	T-G	Homo
SBS	Chr12	23385766	A-G	Homo
SBS	Chr12	27162429	T-A	Homo
SBS	Chr2	26737175	C-T	HET
SBS	Chr2	30415172	A-G	HET
SBS	Chr2	8101494	C-T	HET
SBS	Chr3	1019154	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g02710
SBS	Chr3	7117815	C-T	Homo
SBS	Chr4	29010566	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g48660
SBS	Chr4	3357340	A-T	HET
SBS	Chr5	24794995	T-C	HET
SBS	Chr5	26206227	C-T	Homo	STOP_GAINED	LOC_Os05g45120
SBS	Chr6	25369103	C-T	HET
SBS	Chr6	27184586	C-T	HET
SBS	Chr7	21304968	C-T	Homo
SBS	Chr8	23349514	G-A	HET
SBS	Chr8	405085	T-C	HET
SBS	Chr8	523833	T-C	HET
SBS	Chr8	9663263	T-C	HET

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	293270	293277	7	LOC_Os01g01580
Deletion	Chr4	2368769	2368771	2
Deletion	Chr8	3252296	3252297	1
Deletion	Chr3	7553402	7553404	2	LOC_Os03g13920
Deletion	Chr4	7963105	7963106	1
Deletion	Chr7	11606726	11606727	1
Deletion	Chr7	15412001	15434000	21999	LOC_Os07g26700
Deletion	Chr9	16162556	16162621	65	LOC_Os09g26640
Deletion	Chr3	16675312	16675313	1
Deletion	Chr7	17960280	17960284	4
Deletion	Chr12	21860853	21860854	1
Deletion	Chr12	25846029	25846035	6

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19947889	19947889	1
Insertion	Chr1	36199271	36199276	6
Insertion	Chr11	25275166	25275185	20
Insertion	Chr11	25654167	25654167	1
Insertion	Chr11	27121678	27121717	40
Insertion	Chr12	21982395	21982395	1
Insertion	Chr12	26329059	26329059	1
Insertion	Chr2	16230649	16230649	1
Insertion	Chr3	31099957	31099957	1
Insertion	Chr4	5880103	5880103	1
Insertion	Chr5	9889583	9889586	4	LOC_Os05g17270
Insertion	Chr6	1886472	1886472	1
Insertion	Chr6	25817901	25817901	1
Insertion	Chr7	3639162	3639170	9
Insertion	Chr7	7882486	7882486	1
Insertion	Chr8	11235992	11235992	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9571856	9577575	LOC_Os12g16710
Inversion	Chr12	9571860	9577581	LOC_Os12g16710

Translocations: 30

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	166124	Chr9	15101613
Translocation	Chr12	5460989	Chr3	32963678	2
Translocation	Chr10	9367278	Chr7	8230005	2
Translocation	Chr12	10847965	Chr8	3231393
Translocation	Chr12	11886952	Chr5	9719739	2
Translocation	Chr12	12652926	Chr4	9008286	2
Translocation	Chr5	12928235	Chr2	474613
Translocation	Chr2	13261358	Chr1	42763705
Translocation	Chr6	13698852	Chr1	2504318
Translocation	Chr12	14985567	Chr10	9134148	LOC_Os12g25830
Translocation	Chr12	16158549	Chr5	9093584
Translocation	Chr12	16562361	Chr9	9542562
Translocation	Chr12	17475804	Chr11	5494640
Translocation	Chr7	17538488	Chr1	15921904
Translocation	Chr11	19619708	Chr4	2530360	2
Translocation	Chr9	20294529	Chr4	10954977
Translocation	Chr6	20416870	Chr5	24970035	2
Translocation	Chr6	20501751	Chr1	11600020	2
Translocation	Chr4	22148730	Chr3	15326902
Translocation	Chr12	22176185	Chr2	10452257	LOC_Os12g36180
Translocation	Chr6	22800167	Chr2	17256809	LOC_Os06g38470
Translocation	Chr8	22804004	Chr3	5888251
Translocation	Chr11	23663019	Chr6	11605812
Translocation	Chr3	25386275	Chr1	531828
Translocation	Chr12	25959922	Chr7	2494673
Translocation	Chr5	26006328	Chr1	33853777	2
Translocation	Chr7	26317983	Chr5	17700443
Translocation	Chr11	27186171	Chr4	10494822
Translocation	Chr3	29761888	Chr1	9052666
Translocation	Chr4	34006558	Chr1	9105804

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