Search Results

Mutant Information

Mutant Name	FN260-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN260-S Alignment File
Seed Availability	No
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5653663	G-A	HOMO	INTRON
SBS	Chr1	6403141	G-A	HET	INTRON
SBS	Chr1	15630182	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g27950
SBS	Chr1	35720755	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g61750
SBS	Chr2	6395183	A-G	HOMO	INTERGENIC
SBS	Chr2	19529837	A-T	HET	INTRON
SBS	Chr2	20526845	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34300
SBS	Chr2	34527346	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56390
SBS	Chr4	2361885	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	5321588	G-C	HET	INTRON
SBS	Chr4	7279312	G-A	HET	INTRON
SBS	Chr4	22668530	G-A	HET	INTERGENIC
SBS	Chr4	23494542	A-G	HET	UTR_3_PRIME
SBS	Chr5	5169694	C-T	HET	INTERGENIC
SBS	Chr5	12380270	T-G	HET	INTERGENIC
SBS	Chr5	14558289	C-T	HET	INTERGENIC
SBS	Chr5	18395124	A-T	HET	UTR_3_PRIME
SBS	Chr6	12306322	A-C	HET	INTERGENIC
SBS	Chr6	29862591	C-T	HET	INTERGENIC
SBS	Chr6	30835477	G-A	HET	INTERGENIC
SBS	Chr7	10385995	C-T	HET	INTERGENIC
SBS	Chr8	13883143	C-T	HET	INTERGENIC
SBS	Chr10	1801348	C-T	HOMO	INTRON
SBS	Chr10	9871060	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g19338
SBS	Chr12	8876060	A-T	HET	INTERGENIC
SBS	Chr12	8876061	C-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	426110	426117	7	LOC_Os02g01765
Deletion	Chr7	1047849	1047867	18	LOC_Os07g02800
Deletion	Chr9	4255815	4255816	1
Deletion	Chr2	4554920	4554933	13
Deletion	Chr6	7806284	7806290	6	LOC_Os06g14030
Deletion	Chr1	7972603	7972608	5
Deletion	Chr9	9119746	9119759	13
Deletion	Chr4	13597904	13597907	3	LOC_Os04g23780
Deletion	Chr3	15221692	15221700	8
Deletion	Chr3	15508178	15508185	7
Deletion	Chr4	15984026	15984027	1
Deletion	Chr5	16573182	16573188	6
Deletion	Chr1	16662588	16662595	7
Deletion	Chr5	18427596	18427609	13
Deletion	Chr4	19753302	19753321	19
Deletion	Chr4	20772521	20772536	15
Deletion	Chr1	25237181	25237182	1	LOC_Os01g44050
Deletion	Chr2	25483889	25486300	2411
Deletion	Chr4	30285218	30285223	5	LOC_Os04g51140
Deletion	Chr1	33743797	33743803	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	14209328	14209329	2
Insertion	Chr7	1455532	1455543	12

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	22946118	23092286	2
Inversion	Chr4	31924764	32662824

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5669480	Chr2	17526282
Translocation	Chr7	10214552	Chr6	8086664
Translocation	Chr7	23092004	Chr5	14148362	2
Translocation	Chr7	23092281	Chr5	14148325	2
Translocation	Chr12	24256121	Chr9	17570129	LOC_Os09g28910
Translocation	Chr12	24256984	Chr9	17570113	LOC_Os09g28910

Main menu