Search Nipponbare

Mutant Information

Mutant Name	FN2648-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2648-S-1 Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 60

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10704774	G-A	HET	INTRON
SBS	Chr1	14665619	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	22729856	C-T	HOMO	INTERGENIC
SBS	Chr1	30799356	G-A	HET	INTERGENIC
SBS	Chr1	8472791	C-G	HOMO	INTERGENIC
SBS	Chr10	14813865	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28470
SBS	Chr10	6278960	G-T	HET	INTERGENIC
SBS	Chr10	7020206	G-A	HOMO	INTRON
SBS	Chr10	7579442	C-T	HET	INTRON
SBS	Chr11	13825554	G-C	HET	SYNONYMOUS_CODING
SBS	Chr11	25143238	G-C	HET	INTERGENIC
SBS	Chr11	26626168	A-G	HET	INTERGENIC
SBS	Chr11	4318184	A-C	HET	INTERGENIC
SBS	Chr12	10776927	G-A	HET	INTERGENIC
SBS	Chr12	13074191	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23120
SBS	Chr12	14456304	T-A	HET	UTR_3_PRIME
SBS	Chr12	14596763	A-G	HET	INTERGENIC
SBS	Chr12	1774708	C-T	HET	UTR_5_PRIME
SBS	Chr12	9427676	C-T	HET	INTERGENIC
SBS	Chr2	14689894	C-G	HET	INTERGENIC
SBS	Chr2	15275271	G-A	HET	INTRON
SBS	Chr2	1893387	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	23214240	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g38392
SBS	Chr2	25774240	G-A	HET	UTR_3_PRIME
SBS	Chr2	26507445	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43906
SBS	Chr2	26507452	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43906
SBS	Chr2	35714688	G-C	HOMO	INTRON
SBS	Chr3	10497520	A-G	HET	INTERGENIC
SBS	Chr3	12233342	A-G	HOMO	INTERGENIC
SBS	Chr3	22292358	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g40110
SBS	Chr3	32151790	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g56400
SBS	Chr3	35663492	G-A	HET	UTR_5_PRIME
SBS	Chr4	12800103	C-A	HET	INTRON
SBS	Chr4	2427569	C-T	HET	INTRON
SBS	Chr4	24762958	G-A	HET	INTERGENIC
SBS	Chr4	26150540	G-A	HOMO	INTERGENIC
SBS	Chr4	30427457	G-A	HET	INTERGENIC
SBS	Chr4	35285837	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	10335794	C-T	HOMO	INTERGENIC
SBS	Chr5	12129925	C-T	HET	INTERGENIC
SBS	Chr5	22971043	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g39170
SBS	Chr5	27200736	T-C	HOMO	INTERGENIC
SBS	Chr5	28402682	C-T	HET	INTERGENIC
SBS	Chr5	28808740	C-T	HET	INTERGENIC
SBS	Chr5	29686691	A-T	HET	INTERGENIC
SBS	Chr5	5594979	C-T	HET	INTERGENIC
SBS	Chr6	11958209	G-A	HET	INTERGENIC
SBS	Chr6	16421327	C-A	HET	INTRON
SBS	Chr6	20121665	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34600
SBS	Chr6	5909972	T-C	HET	INTERGENIC
SBS	Chr6	6002346	T-C	HET	INTERGENIC
SBS	Chr7	2907825	A-G	HOMO	INTRON
SBS	Chr7	4758388	C-T	HOMO	UTR_3_PRIME
SBS	Chr7	9541200	G-T	HET	INTERGENIC
SBS	Chr8	17094992	G-A	HOMO	INTERGENIC
SBS	Chr8	19175431	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g31060
SBS	Chr8	24110107	T-C	HET	INTRON
SBS	Chr8	28324506	T-A	HET	INTERGENIC
SBS	Chr8	7184452	C-A	HET	INTERGENIC
SBS	Chr8	7676779	G-A	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	176485	176488	3
Deletion	Chr7	1082946	1082975	29
Deletion	Chr4	2061693	2061695	2
Deletion	Chr2	4064087	4064089	2
Deletion	Chr2	7074065	7074081	16
Deletion	Chr1	7813719	7813721	2
Deletion	Chr6	8622641	8622642	1	LOC_Os06g15220
Deletion	Chr3	9464333	9464337	4	LOC_Os03g17030
Deletion	Chr5	10873678	10873689	11
Deletion	Chr1	12473007	12473008	1
Deletion	Chr3	12666713	12666717	4
Deletion	Chr12	14104001	14166000	61999	7
Deletion	Chr11	15992721	15992722	1
Deletion	Chr1	17191145	17191149	4
Deletion	Chr5	17855227	17855229	2
Deletion	Chr7	20887274	20887276	2
Deletion	Chr8	21665001	21746000	80999	9
Deletion	Chr5	21863695	21863696	1
Deletion	Chr11	23956730	23956731	1
Deletion	Chr5	25108743	25108745	2
Deletion	Chr12	25183530	25183553	23
Deletion	Chr4	25268617	25268625	8
Deletion	Chr1	26245482	26245484	2
Deletion	Chr4	27284930	27284931	1
Deletion	Chr1	31339955	31339962	7
Deletion	Chr1	31355889	31355890	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10023519	10023520	2
Insertion	Chr11	4650373	4650392	20
Insertion	Chr12	3582702	3582703	2
Insertion	Chr12	4433004	4433004	1
Insertion	Chr2	9980121	9980146	26
Insertion	Chr3	2425653	2425653	1
Insertion	Chr4	3726413	3726413	1
Insertion	Chr5	13350245	13350245	1
Insertion	Chr6	16017646	16017646	1
Insertion	Chr6	23566507	23566507	1
Insertion	Chr6	8507675	8507698	24

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	2715392	2783946	LOC_Os04g05420
Inversion	Chr4	2715417	2783955	LOC_Os04g05420
Inversion	Chr9	14587791	15506068
Inversion	Chr9	14587798	15506075
Inversion	Chr2	27431306	27501701

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11561154	Chr2	29427397
Translocation	Chr10	11709908	Chr2	18066734

Main menu

You are here

Search Nipponbare