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Mutant Information

Mutant Name	FN2658-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2658-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 53

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10604210	T-C	Homo
SBS	Chr1	12571703	A-G	HET
SBS	Chr1	15968097	T-A	Homo
SBS	Chr1	21476490	A-T	HET
SBS	Chr1	28645403	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g49870
SBS	Chr10	23012800	G-T	HET
SBS	Chr10	23185776	C-T	HET
SBS	Chr10	4720042	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08702
SBS	Chr11	10522657	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g18640
SBS	Chr11	14480752	G-A	HET
SBS	Chr11	16417094	G-T	HET
SBS	Chr11	23325086	G-A	HET
SBS	Chr11	24660491	G-A	HET
SBS	Chr11	8297218	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14710
SBS	Chr12	10225740	T-G	HET
SBS	Chr12	23312383	C-T	HET
SBS	Chr12	24136237	A-G	HET
SBS	Chr12	3932656	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g07780
SBS	Chr2	11385050	C-T	Homo
SBS	Chr2	26024474	A-T	Homo
SBS	Chr3	1838424	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	24207935	G-A	HET
SBS	Chr3	31392958	G-T	HET
SBS	Chr3	35945318	G-T	HET
SBS	Chr4	14216517	T-A	Homo
SBS	Chr4	15325223	C-A	Homo	STOP_GAINED	LOC_Os04g26290
SBS	Chr4	19045630	C-T	Homo
SBS	Chr4	21745322	T-A	HET
SBS	Chr4	25251352	C-T	Homo
SBS	Chr4	30285421	G-A	Homo
SBS	Chr4	8765173	A-G	Homo
SBS	Chr5	12802298	G-A	HET
SBS	Chr5	14444785	G-A	Homo
SBS	Chr5	18217872	T-C	Homo
SBS	Chr5	19556011	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33340
SBS	Chr5	20369899	T-A	HET
SBS	Chr5	25749517	C-T	HET
SBS	Chr5	29369399	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51200
SBS	Chr5	7118297	T-C	HET
SBS	Chr6	20211010	G-A	Homo
SBS	Chr6	20222556	G-A	HET
SBS	Chr6	25864775	G-A	HET
SBS	Chr7	15733876	C-T	Homo
SBS	Chr7	66470	T-A	HET
SBS	Chr8	17931019	C-T	HET
SBS	Chr8	180658	C-T	HET
SBS	Chr8	21219681	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g33910
SBS	Chr8	23025642	G-A	Homo
SBS	Chr8	4987631	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08630
SBS	Chr8	5927471	G-A	HET
SBS	Chr9	4155116	C-T	Homo
SBS	Chr9	5191377	C-A	HET
SBS	Chr9	8587553	T-C	HET

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1126153	1126156	3
Deletion	Chr9	1889397	1889398	1
Deletion	Chr6	5394300	5394317	17
Deletion	Chr6	5731403	5731419	16
Deletion	Chr1	10604406	10604414	8
Deletion	Chr5	12279001	12360000	80999	12
Deletion	Chr5	12369001	12380000	10999	3
Deletion	Chr11	12805330	12805332	2	LOC_Os11g22336
Deletion	Chr1	13246001	13262000	15999	2
Deletion	Chr4	13745766	13745772	6	LOC_Os04g24060
Deletion	Chr6	14606073	14606090	17
Deletion	Chr8	14976451	14976457	6	LOC_Os08g24750
Deletion	Chr9	16231304	16231305	1
Deletion	Chr8	17299048	17299138	90
Deletion	Chr4	17552001	17587000	34999	4
Deletion	Chr9	18081127	18081132	5	LOC_Os09g29730
Deletion	Chr3	18897930	18897932	2
Deletion	Chr12	19263661	19263673	12
Deletion	Chr10	20971001	20998000	26999	6
Deletion	Chr10	22086847	22086851	4	LOC_Os10g41120
Deletion	Chr5	29007594	29007603	9
Deletion	Chr4	30464174	30464189	15	LOC_Os04g51440
Deletion	Chr3	34983321	34983323	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	20447277	20447300	24
Insertion	Chr12	1632927	1632932	6
Insertion	Chr12	228150	228151	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	17552436	17644272
Inversion	Chr4	17586683	17644273	LOC_Os04g29580

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10750969	Chr4	34819821	2
Translocation	Chr8	27565430	Chr4	10877213	2
Translocation	Chr8	27565450	Chr4	10875680	2

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