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Mutant Information

Mutant Name	FN266-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN266-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12999421	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	11795251	A-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	17024380	T-G	HOMO	INTERGENIC
SBS	Chr11	1914276	G-A	HET	INTRON
SBS	Chr11	4013216	A-G	HET	INTERGENIC
SBS	Chr12	642688	C-A	HOMO	INTRON
SBS	Chr12	7390650	A-T	HET	START_GAINED	LOC_Os12g13290
SBS	Chr2	29810607	T-A	HET	INTERGENIC
SBS	Chr2	33518118	C-A	HET	INTERGENIC
SBS	Chr2	8579524	C-T	HET	INTERGENIC
SBS	Chr3	19021733	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g33250
SBS	Chr3	7487952	A-G	HOMO	INTERGENIC
SBS	Chr3	7722640	G-A	HOMO	INTERGENIC
SBS	Chr4	10752425	C-T	HET	INTERGENIC
SBS	Chr5	21072200	G-A	HET	INTERGENIC
SBS	Chr5	22243901	G-A	HET	INTERGENIC
SBS	Chr5	25797375	G-A	HET	INTRON
SBS	Chr5	5300312	G-A	HET	INTERGENIC
SBS	Chr5	851182	C-T	HET	INTERGENIC
SBS	Chr5	8934547	C-T	HET	INTERGENIC
SBS	Chr5	8934549	G-T	HET	INTERGENIC
SBS	Chr6	16943437	T-C	HET	INTERGENIC
SBS	Chr6	26522345	T-C	HET	INTERGENIC
SBS	Chr6	384324	T-A	HET	INTERGENIC
SBS	Chr7	17158518	C-T	HET	INTERGENIC
SBS	Chr7	27508347	T-A	HET	INTERGENIC
SBS	Chr9	2343015	C-A	HET	INTERGENIC
SBS	Chr9	3841916	C-A	HET	INTERGENIC
SBS	Chr9	4280268	T-C	HET	INTERGENIC
SBS	Chr9	4604877	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g08730
SBS	Chr9	9125219	T-G	HOMO	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1269734	1269758	24	LOC_Os12g03290
Deletion	Chr2	1971964	1971966	2
Deletion	Chr9	5795639	5795643	4
Deletion	Chr5	8930956	8930964	8
Deletion	Chr5	10433566	10433573	7	LOC_Os05g18160
Deletion	Chr10	11529208	11529214	6
Deletion	Chr3	12571203	12571224	21
Deletion	Chr5	17875379	17875387	8
Deletion	Chr1	19006088	19006094	6	LOC_Os01g34470
Deletion	Chr4	19551547	19551548	1
Deletion	Chr1	22284246	22284247	1
Deletion	Chr4	24587040	24587052	12
Deletion	Chr5	28297593	28297594	1
Deletion	Chr1	36596492	36596501	9

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	22168333	22168334	2
Insertion	Chr2	17850754	17850755	2
Insertion	Chr3	3098232	3098234	3
Insertion	Chr4	7855869	7855869	1
Insertion	Chr5	4205563	4205564	2
Insertion	Chr6	11104433	11104434	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	22614523	23869141
Inversion	Chr11	22614881	23869149	LOC_Os11g38140

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	451069	Chr2	10695098	2
Translocation	Chr7	464575	Chr2	10695083	2
Translocation	Chr8	22489357	Chr6	14875237
Translocation	Chr11	22614917	Chr7	464579	2

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